RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PCP4L1A6NKN8 68 aa8.63□□□□□ -1.03
CLN3-249ENST00000636685 MGPP08493 103 aa8.63□□□□□ -1.03
CLN3-249ENST00000636685 KRTAP11-1Q8IUC1 163 aa8.63□□□□□ -1.03
CLN3-249ENST00000636685 HIST1H2BLQ99880 126 aa8.63□□□□□ -1.03
CLN3-249ENST00000636685 SNAI2O43623 268 aa8.62□□□□□ -1.03
CLN3-249ENST00000636685 SUMO4Q6EEV6 95 aa8.62□□□□□ -1.03
CLN3-249ENST00000636685 TMEM136Q6ZRR5 245 aa8.62□□□□□ -1.03
CLN3-249ENST00000636685 ATP5L2Q7Z4Y8 100 aa8.62□□□□□ -1.03
CLN3-249ENST00000636685 PACRGQ96M98 296 aaPredicted RBP8.62□□□□□ -1.03
CLN3-249ENST00000636685 RPP21Q9H633 154 aaKnown RBP8.62□□□□□ -1.03
CLN3-249ENST00000636685 A0A087WZ39 114 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 C19orf71A6NCJ1 209 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 ESDP10768 282 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 XCL1P47992 114 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 JOSD1Q15040 202 aaPredicted RBP8.61□□□□□ -1.03
CLN3-249ENST00000636685 PDZD11Q5EBL8 140 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 PGLYRP4Q96LB8 373 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 AP1S3Q96PC3 154 aa8.61□□□□□ -1.03
CLN3-249ENST00000636685 SSBP4Q9BWG4 385 aaPredicted RBP8.61□□□□□ -1.03
CLN3-249ENST00000636685 ZNF561-AS1K7EIQ3 104 aa8.6□□□□□ -1.03
CLN3-249ENST00000636685 APCSP02743 223 aa8.6□□□□□ -1.03
CLN3-249ENST00000636685 PYY3Q5JQD4 70 aa8.6□□□□□ -1.03
CLN3-249ENST00000636685 NUP35Q8NFH5 326 aa8.6□□□□□ -1.03
CLN3-249ENST00000636685 OR5AL1P0C617 328 aa8.59□□□□□ -1.03
CLN3-249ENST00000636685 FGF6P10767 208 aa8.59□□□□□ -1.03
CLN3-249ENST00000636685 CAMPP49913 170 aa8.59□□□□□ -1.03
CLN3-249ENST00000636685 FOXA3P55318 350 aaPredicted RBP8.59□□□□□ -1.03
CLN3-249ENST00000636685 LINC01547P58512 204 aaPredicted RBP8.59□□□□□ -1.03
CLN3-249ENST00000636685 COTL1Q14019 142 aa8.59□□□□□ -1.03
CLN3-249ENST00000636685 BAGE3Q86Y29 109 aa8.59□□□□□ -1.03
CLN3-249ENST00000636685 CDIP1Q9H305 208 aa8.59□□□□□ -1.03
CLN3-249ENST00000636685 AMMECR1LQ6DCA0 310 aa8.58□□□□□ -1.04
CLN3-249ENST00000636685 MRPL54Q6P161 138 aaKnown RBP8.58□□□□□ -1.04
CLN3-249ENST00000636685 A0A1B0GW15 77 aa8.57□□□□□ -1.04
CLN3-249ENST00000636685 HIGD1CA8MV81 97 aa8.57□□□□□ -1.04
CLN3-249ENST00000636685 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.57□□□□□ -1.04
CLN3-249ENST00000636685 CCL25O15444 150 aa8.57□□□□□ -1.04
CLN3-249ENST00000636685 RPL18AQ02543 176 aaKnown RBP8.57□□□□□ -1.04
CLN3-249ENST00000636685 RNASEKQ6P5S7 137 aaKnown RBP8.57□□□□□ -1.04
CLN3-249ENST00000636685 IGLV4-69A0A075B6H9 119 aa8.56□□□□□ -1.04
CLN3-249ENST00000636685 RIGQ13278 110 aa8.56□□□□□ -1.04
CLN3-249ENST00000636685 OR2D3Q8NGH3 330 aa8.56□□□□□ -1.04
CLN3-249ENST00000636685 RETNLBQ9BQ08 111 aa8.56□□□□□ -1.04
CLN3-249ENST00000636685 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.55□□□□□ -1.04
CLN3-249ENST00000636685 A0A1B0GXF2 115 aa8.55□□□□□ -1.04
CLN3-249ENST00000636685 IGKV2-29A2NJV5 120 aaPredicted RBP8.55□□□□□ -1.04
CLN3-249ENST00000636685 APOMO95445 188 aa8.55□□□□□ -1.04
CLN3-249ENST00000636685 RPS20P60866 119 aaKnown RBP8.55□□□□□ -1.04
CLN3-249ENST00000636685 HBBP68871 147 aa8.55□□□□□ -1.04
CLN3-249ENST00000636685 OR5A1Q8NGJ0 315 aa8.55□□□□□ -1.04
CLN3-249ENST00000636685 LINC00959A0A1B0GUT2 108 aa8.54□□□□□ -1.04
CLN3-249ENST00000636685 BORCS7Q96B45 105 aa8.54□□□□□ -1.04
CLN3-249ENST00000636685 FAM168BA1KXE4 195 aa8.53□□□□□ -1.04
CLN3-249ENST00000636685 NUPR1O60356 82 aa8.53□□□□□ -1.04
CLN3-249ENST00000636685 SERF1AO75920 110 aa8.53□□□□□ -1.04
CLN3-249ENST00000636685 KIAA1644Q3SXP7 199 aa8.53□□□□□ -1.04
CLN3-249ENST00000636685 OPRPNQ99935 248 aaPredicted RBP8.53□□□□□ -1.04
CLN3-249ENST00000636685 A0A1B0GUT8 65 aa8.52□□□□□ -1.05
CLN3-249ENST00000636685 GATD1Q8NB37 220 aa8.52□□□□□ -1.05
CLN3-249ENST00000636685 CAMK2N2Q96S95 79 aa8.52□□□□□ -1.05
CLN3-249ENST00000636685 ALKBH7Q9BT30 221 aaPredicted RBP8.52□□□□□ -1.05
CLN3-249ENST00000636685 TSTD3H0UI37 97 aa8.51□□□□□ -1.05
CLN3-249ENST00000636685 SCGB1D1O95968 90 aa8.51□□□□□ -1.05
CLN3-249ENST00000636685 NTF3P20783 257 aa8.51□□□□□ -1.05
CLN3-249ENST00000636685 TPRXLQ17RH7 258 aa8.51□□□□□ -1.05
CLN3-249ENST00000636685 TPPP3Q9BW30 176 aa8.51□□□□□ -1.05
CLN3-249ENST00000636685 RAB4AP20338 218 aa8.5□□□□□ -1.05
CLN3-249ENST00000636685 CD164L2Q6UWJ8 174 aa8.5□□□□□ -1.05
CLN3-249ENST00000636685 C18orf32Q8TCD1 76 aa8.5□□□□□ -1.05
CLN3-249ENST00000636685 A0A087X002 238 aa8.49□□□□□ -1.05
CLN3-249ENST00000636685 PMCHP20382 165 aa8.49□□□□□ -1.05
CLN3-249ENST00000636685 LINC00310P59036 64 aa8.49□□□□□ -1.05
CLN3-249ENST00000636685 FAM19A5Q7Z5A7 132 aaPredicted RBP8.49□□□□□ -1.05
CLN3-249ENST00000636685 LINC00587B1AMM8 73 aa8.48□□□□□ -1.05
CLN3-249ENST00000636685 H7C423 109 aa8.48□□□□□ -1.05
CLN3-249ENST00000636685 SS18Q15532 418 aa8.48□□□□□ -1.05
CLN3-249ENST00000636685 CHCHD1Q96BP2 118 aaKnown RBP8.48□□□□□ -1.05
CLN3-249ENST00000636685 IGLV7-46A0A075B6I9 117 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 KRTAP9-7A8MTY7 169 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 F2Z2F3 143 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 HSBP1O75506 76 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 CRYGAP11844 174 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 MALP21145 153 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 UBE2BP63146 152 aa8.47□□□□□ -1.05
CLN3-249ENST00000636685 IGLC6P0CF74 106 aa8.46□□□□□ -1.06
CLN3-249ENST00000636685 ZNF25P17030 456 aaPredicted RBP8.46□□□□□ -1.06
CLN3-249ENST00000636685 LYZL1Q6UWQ5 148 aa8.46□□□□□ -1.06
CLN3-249ENST00000636685 KRTAP7-1Q8IUC3 87 aa8.46□□□□□ -1.06
CLN3-249ENST00000636685 TYMSOSQ8TAI1 123 aa8.46□□□□□ -1.06
CLN3-249ENST00000636685 TMEM101Q96IK0 257 aa8.46□□□□□ -1.06
CLN3-249ENST00000636685 C2orf48Q96LS8 159 aa8.46□□□□□ -1.06
CLN3-249ENST00000636685 NCR2O95944 276 aa8.45□□□□□ -1.06
CLN3-249ENST00000636685 LINC00614P0C842 121 aa8.45□□□□□ -1.06
CLN3-249ENST00000636685 KRTAP4-1Q9BYQ7 146 aa8.45□□□□□ -1.06
CLN3-249ENST00000636685 COX7A2LO14548 114 aa8.44□□□□□ -1.06
CLN3-249ENST00000636685 DDTP30046 118 aa8.44□□□□□ -1.06
CLN3-249ENST00000636685 CTAG1AP78358 180 aa8.44□□□□□ -1.06
CLN3-249ENST00000636685 PRO1933Q9H354 126 aa8.44□□□□□ -1.06
CLN3-249ENST00000636685 M0QXV9 152 aa8.43□□□□□ -1.06
CLN3-249ENST00000636685 ZNF861PO60384 105 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms