RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-215ENST00000636674 NTM-AS1Q6ZSK4 140 aa10.39□□□□□ -0.75
CLN6-215ENST00000636674 TRGV1A0A0A0MS02 117 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 F5H768 121 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 COX7A2LO14548 114 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 HERV-K104P63124 156 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 SHISA2Q6UWI4 295 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 C15orf53Q8NAA6 179 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 CDC42SE2Q9NRR3 84 aa10.38□□□□□ -0.75
CLN6-215ENST00000636674 NHLRC4P0CG21 123 aaPredicted RBP10.37□□□□□ -0.75
CLN6-215ENST00000636674 SOSTDC1Q6X4U4 206 aa10.37□□□□□ -0.75
CLN6-215ENST00000636674 NDUFV3P56181 108 aaKnown RBP10.36□□□□□ -0.75
CLN6-215ENST00000636674 Q96MF0 132 aa10.36□□□□□ -0.75
CLN6-215ENST00000636674 Q6ZTI0 123 aa10.35□□□□□ -0.75
CLN6-215ENST00000636674 PRIMA1Q86XR5 153 aa10.35□□□□□ -0.75
CLN6-215ENST00000636674 MTORP42345 2549 aa10.34□□□□□ -0.75
CLN6-215ENST00000636674 TRAV13-1A0A0B4J241 112 aa10.34□□□□□ -0.75
CLN6-215ENST00000636674 NDUFA7O95182 113 aa10.34□□□□□ -0.75
CLN6-215ENST00000636674 TRACP01848 142 aa10.33□□□□□ -0.76
CLN6-215ENST00000636674 GAGE5Q13069 117 aa10.33□□□□□ -0.76
CLN6-215ENST00000636674 GAGE6Q13070 117 aa10.33□□□□□ -0.76
CLN6-215ENST00000636674 TTC32Q5I0X7 151 aa10.33□□□□□ -0.76
CLN6-215ENST00000636674 MEIG1Q5JSS6 88 aa10.33□□□□□ -0.76
CLN6-215ENST00000636674 TMEM243Q9BU79 118 aa10.33□□□□□ -0.76
CLN6-215ENST00000636674 ACYP1P07311 99 aa10.32□□□□□ -0.76
CLN6-215ENST00000636674 FAM222AQ5U5X8 452 aa10.32□□□□□ -0.76
CLN6-215ENST00000636674 CFAP161Q6P656 301 aa10.32□□□□□ -0.76
CLN6-215ENST00000636674 TRBV7-7A0A0K0K1E9 115 aa10.31□□□□□ -0.76
CLN6-215ENST00000636674 GAGE12JA6NER3 117 aa10.31□□□□□ -0.76
CLN6-215ENST00000636674 PF4P02776 101 aa10.31□□□□□ -0.76
CLN6-215ENST00000636674 CMC4P56277 68 aaPredicted RBP10.31□□□□□ -0.76
CLN6-215ENST00000636674 GAGE4Q13068 117 aa10.31□□□□□ -0.76
CLN6-215ENST00000636674 CCL24O00175 119 aa10.31□□□□□ -0.76
CLN6-215ENST00000636674 C16orf74Q96GX8 76 aa10.31□□□□□ -0.76
CLN6-215ENST00000636674 PLAC8L1A1L4L8 177 aa10.3□□□□□ -0.76
CLN6-215ENST00000636674 A0A0U1RRA0 63 aa10.29□□□□□ -0.76
CLN6-215ENST00000636674 TRBV6-4A0A1B0GX49 114 aa10.29□□□□□ -0.76
CLN6-215ENST00000636674 UBE2L6O14933 153 aa10.29□□□□□ -0.76
CLN6-215ENST00000636674 FAM110AQ9BQ89 295 aa10.29□□□□□ -0.76
CLN6-215ENST00000636674 TLN2Q9Y4G6 2542 aa10.29□□□□□ -0.76
CLN6-215ENST00000636674 GIG44P09565 113 aaPredicted RBP10.29□□□□□ -0.76
CLN6-215ENST00000636674 HIST2H2BDQ6DRA6 164 aa10.29□□□□□ -0.76
CLN6-215ENST00000636674 NOP10Q9NPE3 64 aaKnown RBP10.29□□□□□ -0.76
CLN6-215ENST00000636674 DNAJC9-AS1A6NH13 148 aa10.28□□□□□ -0.76
CLN6-215ENST00000636674 TRAV13-2A0A0B4J235 113 aa10.28□□□□□ -0.76
CLN6-215ENST00000636674 OVOL2Q9BRP0 275 aa10.28□□□□□ -0.76
CLN6-215ENST00000636674 GAGE7O76087 117 aa10.27□□□□□ -0.77
CLN6-215ENST00000636674 GAGE12FP0CL80 117 aa10.27□□□□□ -0.77
CLN6-215ENST00000636674 GAGE12GP0CL81 117 aa10.27□□□□□ -0.77
CLN6-215ENST00000636674 GAGE12IP0CL82 117 aa10.27□□□□□ -0.77
CLN6-215ENST00000636674 RPL28P46779 137 aaKnown RBP10.27□□□□□ -0.77
CLN6-215ENST00000636674 COX7B2Q8TF08 81 aa10.26□□□□□ -0.77
CLN6-215ENST00000636674 IMUPQ9GZP8 106 aa10.26□□□□□ -0.77
CLN6-215ENST00000636674 NSD1Q96L73 2696 aaPredicted RBP10.26□□□□□ -0.77
CLN6-215ENST00000636674 SDIM1Q6ZPB5 146 aa10.25□□□□□ -0.77
CLN6-215ENST00000636674 SMR3AQ99954 134 aa10.25□□□□□ -0.77
CLN6-215ENST00000636674 C2CD3Q4AC94 2353 aa10.25□□□□□ -0.77
CLN6-215ENST00000636674 A0A1W2PRX2 142 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 CRPP02741 224 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 FAM218AQ96MZ4 157 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 C22orf24Q9Y442 160 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 ANK3Q12955 4377 aaKnown RBP10.24□□□□□ -0.77
CLN6-215ENST00000636674 SETD2Q9BYW2 2564 aaPredicted RBP10.24□□□□□ -0.77
CLN6-215ENST00000636674 TRGV2A0A075B6R0 118 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 LY6G6DO95868 133 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 C19orf73Q9NVV2 129 aa10.24□□□□□ -0.77
CLN6-215ENST00000636674 B5MCH6 92 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 BAALC-AS2P0C853 105 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 CSNK1G2-AS1Q8NCQ2 148 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 HIVEP2P31629 2446 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 IGHV3OR16-9A0A0B4J2B5 98 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 LOC100131303A0A0U1RQF7 123 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 CCDC179H3BU77 68 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 KRTAP1-1Q07627 177 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 MIR7-3HGQ8N6C7 128 aa10.23□□□□□ -0.77
CLN6-215ENST00000636674 IGKV2-28A0A075B6P5 120 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 TRBV6-8A0A0A6YYG3 113 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 IGKV2D-28P01615 120 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 IGLV1-51P01701 117 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 LINC00337Q8N6G1 96 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 C11orf44Q8N8P7 122 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 ESM1Q9NQ30 184 aa10.22□□□□□ -0.77
CLN6-215ENST00000636674 INAFM2P0DMQ5 153 aa10.21□□□□□ -0.77
CLN6-215ENST00000636674 LINC00643Q86TS7 51 aa10.21□□□□□ -0.77
CLN6-215ENST00000636674 SND1-IT1Q9HBX3 110 aa10.21□□□□□ -0.77
CLN6-215ENST00000636674 FN1P02751 2386 aaKnown RBP10.21□□□□□ -0.77
CLN6-215ENST00000636674 TRGV4A0A0C4DH28 118 aa10.21□□□□□ -0.78
CLN6-215ENST00000636674 IBA57-AS1B1ANH7 110 aa10.21□□□□□ -0.78
CLN6-215ENST00000636674 A0A087WZ39 114 aa10.2□□□□□ -0.78
CLN6-215ENST00000636674 FHL2Q14192 279 aa10.2□□□□□ -0.78
CLN6-215ENST00000636674 C4orf48Q5BLP8 95 aa10.2□□□□□ -0.78
CLN6-215ENST00000636674 C16orf95Q9H693 158 aa10.2□□□□□ -0.78
CLN6-215ENST00000636674 SS18L2Q9UHA2 77 aa10.2□□□□□ -0.78
CLN6-215ENST00000636674 SONP18583 2426 aaKnown RBP10.2□□□□□ -0.78
CLN6-215ENST00000636674 IGLV4-60A0A075B6I1 120 aa10.19□□□□□ -0.78
CLN6-215ENST00000636674 SMCR5Q8TEV8 140 aa10.19□□□□□ -0.78
CLN6-215ENST00000636674 WNK1Q9H4A3 2382 aa10.19□□□□□ -0.78
CLN6-215ENST00000636674 WFDC10AQ9H1F0 79 aa10.19□□□□□ -0.78
CLN6-215ENST00000636674 NF1P21359 2839 aa10.18□□□□□ -0.78
CLN6-215ENST00000636674 MALP21145 153 aa10.18□□□□□ -0.78
CLN6-215ENST00000636674 NIPBLQ6KC79 2804 aaeCLIP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms