RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 LINC00518Q8N0U6 118 aa8.46□□□□□ -1.06
PNKP-217ENST00000625216 CDC42SE2Q9NRR3 84 aa8.46□□□□□ -1.06
PNKP-217ENST00000625216 MRPL35Q9NZE8 188 aaKnown RBP8.46□□□□□ -1.06
PNKP-217ENST00000625216 CHTOPQ9Y3Y2 248 aaKnown RBP8.46□□□□□ -1.06
PNKP-217ENST00000625216 F8VRH5 84 aa8.45□□□□□ -1.06
PNKP-217ENST00000625216 PSCAO43653 123 aa8.45□□□□□ -1.06
PNKP-217ENST00000625216 TMEM101Q96IK0 257 aa8.45□□□□□ -1.06
PNKP-217ENST00000625216 C12orf57Q99622 126 aa8.45□□□□□ -1.06
PNKP-217ENST00000625216 VCX2Q9H322 139 aa8.45□□□□□ -1.06
PNKP-217ENST00000625216 IGHV3-30P01768 117 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 IGHV3-33P01772 117 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 IGHV3-30-3P0DP02 117 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 IGHV3-30-5P0DP03 117 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 PAPPA-AS1Q5QFB9 102 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 ZNF664Q8N3J9 261 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 MAPKAPK5-AS1Q8N8E1 139 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 TM2D2Q9BX73 214 aa8.44□□□□□ -1.06
PNKP-217ENST00000625216 A0A1B0GUV1 79 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 C11orf86A6NJI1 115 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 TMEM262E9PQX1 116 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 DPM2O94777 84 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 UBE2D1P51668 147 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 MAJINQ3KP22 176 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 Q8N1X5 172 aa8.43□□□□□ -1.06
PNKP-217ENST00000625216 TRAV8-3A0A0A6YYJ7 113 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 A0A0J9YXV3 536 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 IGKCP01834 107 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 IGLC3P0DOY3 106 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 PKIAP61925 76 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 C2orf88Q9BSF0 95 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 Q9HAA7 133 aa8.42□□□□□ -1.06
PNKP-217ENST00000625216 hDV102S1A0JD36 115 aa8.41□□□□□ -1.06
PNKP-217ENST00000625216 LRCOL1A6NCL2 159 aa8.41□□□□□ -1.06
PNKP-217ENST00000625216 CLPSL2Q6UWE3 100 aa8.41□□□□□ -1.06
PNKP-217ENST00000625216 NTN5Q8WTR8 489 aaPredicted RBP8.41□□□□□ -1.06
PNKP-217ENST00000625216 CHAC1Q9BUX1 264 aa8.41□□□□□ -1.06
PNKP-217ENST00000625216 KRTAP4-5Q9BYR2 181 aa8.41□□□□□ -1.06
PNKP-217ENST00000625216 COX11Q9Y6N1 276 aa8.41□□□□□ -1.06
PNKP-217ENST00000625216 TRAV13-1A0A0B4J241 112 aa8.4□□□□□ -1.06
PNKP-217ENST00000625216 IGKV3OR2-268A0A0C4DH90 116 aa8.4□□□□□ -1.06
PNKP-217ENST00000625216 GCSHP23434 173 aa8.4□□□□□ -1.06
PNKP-217ENST00000625216 PLNP26678 52 aa8.4□□□□□ -1.06
PNKP-217ENST00000625216 VAMP8Q9BV40 100 aa8.4□□□□□ -1.06
PNKP-217ENST00000625216 ANGP03950 147 aaKnown RBP8.39□□□□□ -1.07
PNKP-217ENST00000625216 ZNF22P17026 224 aaPredicted RBP8.39□□□□□ -1.07
PNKP-217ENST00000625216 FAM19A3Q7Z5A8 133 aa8.39□□□□□ -1.07
PNKP-217ENST00000625216 PAM16Q9Y3D7 125 aa8.39□□□□□ -1.07
PNKP-217ENST00000625216 FAT1Q14517 4588 aa8.39□□□□□ -1.07
PNKP-217ENST00000625216 IGLV5-52A0A0A0MRZ9 124 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 TINCRA0A1B0GVN0 87 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 FUSP35637 526 aaKnown RBP eCLIP8.38□□□□□ -1.07
PNKP-217ENST00000625216 ANKRD39Q53RE8 183 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 LINC00242Q5T6M2 205 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 LINC00269Q8N2A0 174 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 STPG4Q8N801 248 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 Q8N814 137 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 RMI2Q96E14 147 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 KLK12Q9UKR0 248 aa8.38□□□□□ -1.07
PNKP-217ENST00000625216 LINC00959A0A1B0GUT2 108 aa8.37□□□□□ -1.07
PNKP-217ENST00000625216 XGP55808 180 aa8.37□□□□□ -1.07
PNKP-217ENST00000625216 KRTAP10-1P60331 282 aa8.37□□□□□ -1.07
PNKP-217ENST00000625216 COX6A2Q02221 97 aa8.37□□□□□ -1.07
PNKP-217ENST00000625216 SPATA45Q537H7 98 aa8.37□□□□□ -1.07
PNKP-217ENST00000625216 IGLV5-45A0A087WSX0 123 aa8.36□□□□□ -1.07
PNKP-217ENST00000625216 S100A12P80511 92 aa8.36□□□□□ -1.07
PNKP-217ENST00000625216 REG3AQ06141 175 aa8.36□□□□□ -1.07
PNKP-217ENST00000625216 PRR34Q9NV39 138 aa8.36□□□□□ -1.07
PNKP-217ENST00000625216 DNAH8Q96JB1 4490 aa8.35□□□□□ -1.07
PNKP-217ENST00000625216 TMEM170BQ5T4T1 132 aa8.35□□□□□ -1.07
PNKP-217ENST00000625216 ENHOQ6UWT2 76 aa8.35□□□□□ -1.07
PNKP-217ENST00000625216 GEMIN7Q9H840 131 aaKnown RBP8.35□□□□□ -1.07
PNKP-217ENST00000625216 IGKV2D-26A0A0A0MRZ7 120 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 TMEM223A0PJW6 202 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 EPM2AB3EWF7 344 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 HSBP1L1C9JCN9 74 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 CCL25O15444 150 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 HERVK_113P63121 156 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 SEC11AP67812 179 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 LINC00469Q8N7U9 141 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 PRO1933Q9H354 126 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 CDKN2A-AS1Q9UH64 79 aa8.34□□□□□ -1.07
PNKP-217ENST00000625216 IGLV10-54A0A075B6I4 117 aa8.33□□□□□ -1.08
PNKP-217ENST00000625216 SS18Q15532 418 aa8.33□□□□□ -1.08
PNKP-217ENST00000625216 UBE2WQ96B02 151 aa8.33□□□□□ -1.08
PNKP-217ENST00000625216 TP73-AS1Q9UF72 201 aa8.33□□□□□ -1.08
PNKP-217ENST00000625216 IGKV2D-24A0A075B6R9 120 aa8.32□□□□□ -1.08
PNKP-217ENST00000625216 IGHV3OR16-9A0A0B4J2B5 98 aa8.32□□□□□ -1.08
PNKP-217ENST00000625216 E9PLD3 99 aa8.32□□□□□ -1.08
PNKP-217ENST00000625216 CRPP02741 224 aa8.32□□□□□ -1.08
PNKP-217ENST00000625216 SPINK8P0C7L1 97 aa8.32□□□□□ -1.08
PNKP-217ENST00000625216 XCL1P47992 114 aa8.32□□□□□ -1.08
PNKP-217ENST00000625216 CHCHD10Q8WYQ3 142 aaPredicted RBP8.32□□□□□ -1.08
PNKP-217ENST00000625216 IGHV3-64A0A075B6Q5 118 aa8.31□□□□□ -1.08
PNKP-217ENST00000625216 TSPEAR-AS2P59090 65 aa8.31□□□□□ -1.08
PNKP-217ENST00000625216 HERVK_113P61574 105 aa8.31□□□□□ -1.08
PNKP-217ENST00000625216 WFDC2Q14508 124 aa8.31□□□□□ -1.08
PNKP-217ENST00000625216 SMIM1B2RUZ4 78 aa8.3□□□□□ -1.08
PNKP-217ENST00000625216 NMUP48645 174 aa8.3□□□□□ -1.08
PNKP-217ENST00000625216 FOXI1Q12951 378 aa8.3□□□□□ -1.08
PNKP-217ENST00000625216 KRTAP26-1Q6PEX3 210 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms