RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.83□□□□□ -1.165e-9■■■□□ 17.5
UPF3A-212ENST00000619079 SPINK13Q1W4C9 94 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 DGAT2L7PQ6IED9 249 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 FAM218AQ96MZ4 157 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 ABCA2Q9BZC7 2435 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.82□□□□□ -1.16
UPF3A-212ENST00000619079 IGKV2-29A2NJV5 120 aaPredicted RBP7.82□□□□□ -1.16
UPF3A-212ENST00000619079 IGKV3-20P01619 116 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 KRTAP1-1Q07627 177 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 SOSTDC1Q6X4U4 206 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 LINC00467Q9BRT7 94 aa7.82□□□□□ -1.16
UPF3A-212ENST00000619079 HIVEP2P31629 2446 aa7.81□□□□□ -1.16
UPF3A-212ENST00000619079 J3QLI3 93 aa7.81□□□□□ -1.16
UPF3A-212ENST00000619079 CRPP02741 224 aa7.81□□□□□ -1.16
UPF3A-212ENST00000619079 NDUFC2-KCTD14E9PQ53 114 aa7.81□□□□□ -1.16
UPF3A-212ENST00000619079 FAM19A3Q7Z5A8 133 aa7.81□□□□□ -1.16
UPF3A-212ENST00000619079 SONP18583 2426 aaKnown RBP7.81□□□□□ -1.16
UPF3A-212ENST00000619079 IGHV3-73A0A0B4J1V6 119 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 USP17L23D6RBM5 183 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 SYNJ2BPP57105 145 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 INAFM1C9JVW0 142 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 H0YGX0 51 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 KIR2DL5BQ8NHK3 375 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 ZNF625Q96I27 306 aaPredicted RBP7.8□□□□□ -1.16
UPF3A-212ENST00000619079 OBSCN-AS1Q96MR7 158 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 CYSTM1Q9H1C7 97 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 Q9HAA7 133 aa7.8□□□□□ -1.16
UPF3A-212ENST00000619079 A0A0U1RRA0 63 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 SMIM1B2RUZ4 78 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 K7EQG2 157 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 AVPP01185 164 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 MRAPQ8TCY5 172 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 NDUFC2O95298 119 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 IGLV1-40P01703 118 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 S100A7L2Q5SY68 101 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 LINC00242Q5T6M2 205 aa7.79□□□□□ -1.16
UPF3A-212ENST00000619079 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.79□□□□□ -1.16
UPF3A-212ENST00000619079 MTORP42345 2549 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 IGKV3D-7A0A0C4DH55 119 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 PROK1P58294 105 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 ATP5EP2Q5VTU8 51 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 DSCR8Q96T75 97 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 C14orf132Q9NPU4 83 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 COX6A2Q02221 97 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 LINC00846Q9NV44 126 aa7.78□□□□□ -1.16
UPF3A-212ENST00000619079 TEP1Q99973 2627 aaKnown RBP7.77□□□□□ -1.17
UPF3A-212ENST00000619079 IGHV3OR16-12A0A075B7B8 117 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 IGHV3-53P01767 116 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 IGHV4-38-2P0DP08 117 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 BRD3OSQ6XYD6 125 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 LINC01561Q8N1V8 128 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 ZFHX3Q15911 3703 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 F5H768 121 aa7.77□□□□□ -1.17
UPF3A-212ENST00000619079 NACAE9PAV3 2078 aa7.76□□□□□ -1.17
UPF3A-212ENST00000619079 EDN2P20800 178 aa7.76□□□□□ -1.17
UPF3A-212ENST00000619079 Q5XG85 94 aa7.76□□□□□ -1.17
UPF3A-212ENST00000619079 OXTP01178 125 aa7.75□□□□□ -1.17
UPF3A-212ENST00000619079 HOXD3P31249 432 aaPredicted RBP7.75□□□□□ -1.17
UPF3A-212ENST00000619079 A0A087WVE0 104 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 KNCNA6PVL3 124 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 C4orf26Q17RF5 130 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 Q6ZSN1 163 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 ANK3Q12955 4377 aaKnown RBP7.74□□□□□ -1.17
UPF3A-212ENST00000619079 IGHV3-38A0A0C4DH36 116 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 RS1O15537 224 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 HTN1P15515 57 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 SND1-IT1Q9HBX3 110 aa7.74□□□□□ -1.17
UPF3A-212ENST00000619079 A0A087WYN8 130 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 HRCT1Q6UXD1 115 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 LINC00337Q8N6G1 96 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 CUBNO60494 3623 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 A6NDX4 124 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 RBMY1A1P0DJD3 496 aaKnown RBP7.73□□□□□ -1.17
UPF3A-212ENST00000619079 RBMY1CP0DJD4 496 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 CFHR3Q02985 330 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 RBMY1FQ15415 496 aaKnown RBP7.73□□□□□ -1.17
UPF3A-212ENST00000619079 SMIM11BQ8TCY0 68 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 Q9UF83 564 aa7.73□□□□□ -1.17
UPF3A-212ENST00000619079 LY6EQ16553 131 aa7.72□□□□□ -1.17
UPF3A-212ENST00000619079 NSD1Q96L73 2696 aaPredicted RBP7.72□□□□□ -1.17
UPF3A-212ENST00000619079 FN1P02751 2386 aaKnown RBP7.72□□□□□ -1.17
UPF3A-212ENST00000619079 FSHBP01225 129 aa7.72□□□□□ -1.17
UPF3A-212ENST00000619079 CCKP06307 115 aa7.72□□□□□ -1.17
UPF3A-212ENST00000619079 IGKV2-28A0A075B6P5 120 aa7.71□□□□□ -1.17
UPF3A-212ENST00000619079 H3BUX3 64 aa7.71□□□□□ -1.17
UPF3A-212ENST00000619079 IGKV2D-28P01615 120 aa7.71□□□□□ -1.17
UPF3A-212ENST00000619079 RBMY1BA6NDE4 496 aaKnown RBP7.71□□□□□ -1.18
UPF3A-212ENST00000619079 RBMY1EA6NEQ0 496 aaKnown RBP7.71□□□□□ -1.18
UPF3A-212ENST00000619079 LECT2O14960 151 aa7.71□□□□□ -1.18
UPF3A-212ENST00000619079 GHRHP01286 108 aa7.71□□□□□ -1.18
UPF3A-212ENST00000619079 RBMY1DP0C7P1 496 aaKnown RBP7.71□□□□□ -1.18
UPF3A-212ENST00000619079 FHL2Q14192 279 aa7.71□□□□□ -1.18
UPF3A-212ENST00000619079 DEFB112Q30KQ8 113 aa7.71□□□□□ -1.18
UPF3A-212ENST00000619079 C9orf129Q5T035 196 aaKnown RBP7.71□□□□□ -1.18
UPF3A-212ENST00000619079 MIR7-3HGQ8N6C7 128 aa7.71□□□□□ -1.18
UPF3A-212ENST00000619079 ORMDL1Q9P0S3 153 aa7.71□□□□□ -1.18
UPF3A-212ENST00000619079 NIPBLQ6KC79 2804 aaeCLIP7.71□□□□□ -1.18
UPF3A-212ENST00000619079 TRBV10-3A0A0K0K1G6 114 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 A8MTW9 85 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 JMJD7-PLA2G4BH0Y9G9 81 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms