RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 C5orf56Q8N8D9 126 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 LINC00308Q8TCZ7 52 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 SNURFQ9Y675 71 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 ANKRD17O75179 2603 aaKnown RBP7.41□□□□□ -1.22
VPS39-214ENST00000614932 IGLV4-3A0A075B6K6 122 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 PAX4O43316 350 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 MED14OSP0DP75 135 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 LINC00315P59091 139 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 FAM110DQ8TAY7 271 aaPredicted RBP7.41□□□□□ -1.22
VPS39-214ENST00000614932 NBPF19A0A087WUL8 3843 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 TRAV13-2A0A0B4J235 113 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 TRBV10-3A0A0K0K1G6 114 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 PF4P02776 101 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 DEFB1P60022 68 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 OXLD1Q5BKU9 147 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 SUMO4Q6EEV6 95 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 ENHOQ6UWT2 76 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 KIF25-AS1Q9Y6Z4 181 aa7.4□□□□□ -1.22
VPS39-214ENST00000614932 PRR9Q5T870 116 aa7.4□□□□□ -1.23
VPS39-214ENST00000614932 OVOL2Q9BRP0 275 aa7.4□□□□□ -1.23
VPS39-214ENST00000614932 U3KQE9 123 aa7.4□□□□□ -1.23
VPS39-214ENST00000614932 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.39□□□□□ -1.23
VPS39-214ENST00000614932 TLN2Q9Y4G6 2542 aa7.39□□□□□ -1.23
VPS39-214ENST00000614932 A8MZ25 164 aa7.39□□□□□ -1.23
VPS39-214ENST00000614932 C4orf48Q5BLP8 95 aa7.39□□□□□ -1.23
VPS39-214ENST00000614932 SOSTDC1Q6X4U4 206 aa7.39□□□□□ -1.23
VPS39-214ENST00000614932 ZNF469Q96JG9 3925 aaPredicted RBP7.38□□□□□ -1.23
VPS39-214ENST00000614932 TRBV6-5A0A0K0K1A5 114 aa7.38□□□□□ -1.23
VPS39-214ENST00000614932 C20orf203Q8NBC4 194 aa7.38□□□□□ -1.23
VPS39-214ENST00000614932 HOXD3P31249 432 aaPredicted RBP7.38□□□□□ -1.23
VPS39-214ENST00000614932 FAM229BQ4G0N7 80 aa7.38□□□□□ -1.23
VPS39-214ENST00000614932 TRAV21A0A0B4J279 112 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 CLPSL1A2RUU4 121 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 F5H697 171 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 RNASE4P34096 147 aaKnown RBP7.37□□□□□ -1.23
VPS39-214ENST00000614932 UNQ9165/PRO28630Q6UXU0 137 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 MRPL53Q96EL3 112 aaKnown RBP7.37□□□□□ -1.23
VPS39-214ENST00000614932 IBA57-AS1B1ANH7 110 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 RPL11P62913 178 aaKnown RBP7.37□□□□□ -1.23
VPS39-214ENST00000614932 LENEPQ9Y5L5 61 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 NAV2Q8IVL1 2488 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 NDUFA1O15239 70 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 MSMBP08118 114 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 HIST2H2BCQ6DN03 193 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 HIST2H2BDQ6DRA6 164 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 C10orf99Q6UWK7 81 aa7.37□□□□□ -1.23
VPS39-214ENST00000614932 MRPL55Q7Z7F7 128 aaKnown RBP7.37□□□□□ -1.23
VPS39-214ENST00000614932 KRTAP10-9P60411 292 aa7.36□□□□□ -1.23
VPS39-214ENST00000614932 NCR3O14931 201 aa7.36□□□□□ -1.23
VPS39-214ENST00000614932 ZNF625Q96I27 306 aaPredicted RBP7.36□□□□□ -1.23
VPS39-214ENST00000614932 MXRA5Q9NR99 2828 aa7.35□□□□□ -1.23
VPS39-214ENST00000614932 RNASE3P12724 160 aaKnown RBP7.35□□□□□ -1.23
VPS39-214ENST00000614932 CD28P10747 220 aa7.35□□□□□ -1.23
VPS39-214ENST00000614932 STHQ8IWL8 128 aa7.35□□□□□ -1.23
VPS39-214ENST00000614932 TEX15Q9BXT5 2789 aa7.35□□□□□ -1.23
VPS39-214ENST00000614932 SONP18583 2426 aaKnown RBP7.35□□□□□ -1.23
VPS39-214ENST00000614932 GNRH2O43555 120 aa7.34□□□□□ -1.23
VPS39-214ENST00000614932 IGF1P05019 195 aa7.34□□□□□ -1.23
VPS39-214ENST00000614932 PIK3CD-AS1Q5SR53 167 aa7.34□□□□□ -1.23
VPS39-214ENST00000614932 IGHV4-59P01825 116 aa7.34□□□□□ -1.23
VPS39-214ENST00000614932 CCDC168Q8NDH2 2452 aa7.34□□□□□ -1.23
VPS39-214ENST00000614932 A0A087WWL8 130 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 A0A087WYN8 130 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 F6UB75 175 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 DAD1P61803 113 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 ESRGQ1W209 222 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 ZFAND2AQ8N6M9 145 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 DEFB112Q30KQ8 113 aa7.33□□□□□ -1.24
VPS39-214ENST00000614932 UBL5Q9BZL1 73 aa7.32□□□□□ -1.24
VPS39-214ENST00000614932 CREBBPQ92793 2442 aa7.32□□□□□ -1.24
VPS39-214ENST00000614932 MUC4Q99102 2169 aa7.32□□□□□ -1.24
VPS39-214ENST00000614932 B4DSR2 109 aa7.32□□□□□ -1.24
VPS39-214ENST00000614932 MIFP14174 115 aa7.32□□□□□ -1.24
VPS39-214ENST00000614932 C6orf223Q8N319 242 aa7.31□□□□□ -1.24
VPS39-214ENST00000614932 SORL1Q92673 2214 aa7.31□□□□□ -1.24
VPS39-214ENST00000614932 A6NDX4 124 aa7.31□□□□□ -1.24
VPS39-214ENST00000614932 H0YGX0 51 aa7.31□□□□□ -1.24
VPS39-214ENST00000614932 MIR7-3HGQ8N6C7 128 aa7.31□□□□□ -1.24
VPS39-214ENST00000614932 FAM104AQ969W3 186 aa7.31□□□□□ -1.24
VPS39-214ENST00000614932 ZNF843Q8N446 348 aa7.3□□□□□ -1.24
VPS39-214ENST00000614932 TRAV10A0A0B4J240 114 aa7.3□□□□□ -1.24
VPS39-214ENST00000614932 M0QY20 66 aa7.3□□□□□ -1.24
VPS39-214ENST00000614932 Q9H8V8 135 aa7.3□□□□□ -1.24
VPS39-214ENST00000614932 UBR5O95071 2799 aaPredicted RBP7.3□□□□□ -1.24
VPS39-214ENST00000614932 C19orf54Q5BKX5 351 aa7.29□□□□□ -1.24
VPS39-214ENST00000614932 SETD2Q9BYW2 2564 aaPredicted RBP7.29□□□□□ -1.24
VPS39-214ENST00000614932 MYO9AB2RTY4 2548 aa7.29□□□□□ -1.24
VPS39-214ENST00000614932 CRPP02741 224 aa7.29□□□□□ -1.24
VPS39-214ENST00000614932 FAM74A4Q5TZK3 123 aa7.29□□□□□ -1.24
VPS39-214ENST00000614932 ORMDL1Q9P0S3 153 aa7.29□□□□□ -1.24
VPS39-214ENST00000614932 A0A087WZ39 114 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 RNASE13Q5GAN3 156 aaKnown RBP7.28□□□□□ -1.24
VPS39-214ENST00000614932 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.28□□□□□ -1.24
VPS39-214ENST00000614932 LECT2O14960 151 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 APCP25054 2843 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 TRBV7-4A0A0J9YYF1 115 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 JMJD7-PLA2G4BH0Y9G9 81 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 IGKV3-20P01619 116 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 RHPN1-AS1Q9BWJ2 59 aa7.28□□□□□ -1.24
VPS39-214ENST00000614932 RBM12B-AS1Q9P1G2 102 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms