RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PLA2G1BP04054 148 aaKnown RBP12.49□□□□□ -0.41
UPF1-212ENST00000601689 SDIM1Q6ZPB5 146 aa12.49□□□□□ -0.41
UPF1-212ENST00000601689 C5orf38Q86SI9 138 aa12.49□□□□□ -0.41
UPF1-212ENST00000601689 CARD19Q96LW7 228 aa12.48□□□□□ -0.41
UPF1-212ENST00000601689 CIRBP-AS1Q8TBR5 109 aa12.47□□□□□ -0.41
UPF1-212ENST00000601689 SLPIP03973 132 aa12.46□□□□□ -0.41
UPF1-212ENST00000601689 SEC11AP67812 179 aa12.46□□□□□ -0.41
UPF1-212ENST00000601689 SYCNQ0VAF6 134 aa12.46□□□□□ -0.41
UPF1-212ENST00000601689 TOMM6Q96B49 74 aa12.46□□□□□ -0.41
UPF1-212ENST00000601689 TIMM17AQ99595 171 aa12.46□□□□□ -0.41
UPF1-212ENST00000601689 OR10D4PQ8NGN7 298 aa12.45□□□□□ -0.42
UPF1-212ENST00000601689 SCGB3A1Q96QR1 104 aa12.45□□□□□ -0.42
UPF1-212ENST00000601689 CAMK2N2Q96S95 79 aa12.45□□□□□ -0.42
UPF1-212ENST00000601689 LINC00474Q9P2X8 69 aa12.45□□□□□ -0.42
UPF1-212ENST00000601689 DNAH8Q96JB1 4490 aa12.45□□□□□ -0.42
UPF1-212ENST00000601689 IGLV4-69A0A075B6H9 119 aa12.44□□□□□ -0.42
UPF1-212ENST00000601689 COX6A2Q02221 97 aa12.44□□□□□ -0.42
UPF1-212ENST00000601689 ERASQ7Z444 233 aa12.44□□□□□ -0.42
UPF1-212ENST00000601689 LINC00528Q8N1L1 170 aa12.44□□□□□ -0.42
UPF1-212ENST00000601689 KRTAP4-5Q9BYR2 181 aa12.44□□□□□ -0.42
UPF1-212ENST00000601689 IGHV3OR16-9A0A0B4J2B5 98 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 IGIPA6NJ69 53 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 F8WDY8 70 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 RAB5BP61020 215 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 SPAG11BQ08648 103 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 ORAOV1Q8WV07 137 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 FAM104AQ969W3 186 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 C2orf48Q96LS8 159 aa12.43□□□□□ -0.42
UPF1-212ENST00000601689 LINC00526Q96FQ7 95 aa12.42□□□□□ -0.42
UPF1-212ENST00000601689 AMELXQ99217 191 aa12.42□□□□□ -0.42
UPF1-212ENST00000601689 INAFM2P0DMQ5 153 aa12.41□□□□□ -0.42
UPF1-212ENST00000601689 UBE2D1P51668 147 aa12.41□□□□□ -0.42
UPF1-212ENST00000601689 LINC00242Q5T6M2 205 aa12.41□□□□□ -0.42
UPF1-212ENST00000601689 A0A087WZ39 114 aa12.4□□□□□ -0.42
UPF1-212ENST00000601689 LINC01546A6NGU7 62 aa12.4□□□□□ -0.42
UPF1-212ENST00000601689 HERVK_113P63121 156 aa12.4□□□□□ -0.42
UPF1-212ENST00000601689 GEMIN7Q9H840 131 aaKnown RBP12.4□□□□□ -0.42
UPF1-212ENST00000601689 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.4□□□□□ -0.42
UPF1-212ENST00000601689 IGKV2-24A0A0C4DH68 120 aa12.39□□□□□ -0.43
UPF1-212ENST00000601689 LINC00614P0C842 121 aa12.39□□□□□ -0.43
UPF1-212ENST00000601689 LINC01561Q8N1V8 128 aa12.39□□□□□ -0.43
UPF1-212ENST00000601689 PACRGQ96M98 296 aaPredicted RBP12.39□□□□□ -0.43
UPF1-212ENST00000601689 LOC107984640A0A0U1RRK4 108 aa12.38□□□□□ -0.43
UPF1-212ENST00000601689 NDUFA1O15239 70 aa12.38□□□□□ -0.43
UPF1-212ENST00000601689 CIRBPQ14011 172 aaKnown RBP12.38□□□□□ -0.43
UPF1-212ENST00000601689 MAJINQ3KP22 176 aa12.38□□□□□ -0.43
UPF1-212ENST00000601689 SLC7A5P1Q8MH63 180 aa12.38□□□□□ -0.43
UPF1-212ENST00000601689 KRTAP17-1Q9BYP8 105 aa12.38□□□□□ -0.43
UPF1-212ENST00000601689 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.37□□□□□ -0.43
UPF1-212ENST00000601689 PRSS2P07478 247 aa12.37□□□□□ -0.43
UPF1-212ENST00000601689 C18orf32Q8TCD1 76 aa12.37□□□□□ -0.43
UPF1-212ENST00000601689 SPACA4Q8TDM5 124 aa12.37□□□□□ -0.43
UPF1-212ENST00000601689 A0A087WYN8 130 aa12.36□□□□□ -0.43
UPF1-212ENST00000601689 CHTF8P0CG12 524 aa12.36□□□□□ -0.43
UPF1-212ENST00000601689 Q6ZRU5 148 aa12.36□□□□□ -0.43
UPF1-212ENST00000601689 RNF151Q2KHN1 245 aa12.35□□□□□ -0.43
UPF1-212ENST00000601689 ZC2HC1BQ5TFG8 222 aa12.35□□□□□ -0.43
UPF1-212ENST00000601689 LINC00173Q6ZV60 143 aa12.35□□□□□ -0.43
UPF1-212ENST00000601689 FAM19A3Q7Z5A8 133 aa12.35□□□□□ -0.43
UPF1-212ENST00000601689 PCLOQ9Y6V0 5065 aa12.34□□□□□ -0.43
UPF1-212ENST00000601689 HBDP02042 147 aa12.34□□□□□ -0.43
UPF1-212ENST00000601689 C7orf33Q8WU49 177 aa12.34□□□□□ -0.43
UPF1-212ENST00000601689 MRPL35Q9NZE8 188 aaKnown RBP12.34□□□□□ -0.43
UPF1-212ENST00000601689 RPL37AP61513 92 aaKnown RBP12.33□□□□□ -0.44
UPF1-212ENST00000601689 GAGE2BQ13066 116 aa12.33□□□□□ -0.44
UPF1-212ENST00000601689 PMVKQ15126 192 aa12.33□□□□□ -0.44
UPF1-212ENST00000601689 CBLN2Q8IUK8 224 aa12.33□□□□□ -0.44
UPF1-212ENST00000601689 STPG4Q8N801 248 aa12.33□□□□□ -0.44
UPF1-212ENST00000601689 FAT1Q14517 4588 aa12.32□□□□□ -0.44
UPF1-212ENST00000601689 A0A096LNI7 61 aa12.32□□□□□ -0.44
UPF1-212ENST00000601689 PANO1I0J062 215 aa12.32□□□□□ -0.44
UPF1-212ENST00000601689 ATP5LO75964 103 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 NDUFA6P56556 154 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 CKS1BP61024 79 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 RPL18AQ02543 176 aaKnown RBP12.31□□□□□ -0.44
UPF1-212ENST00000601689 C6orf226Q5I0X4 101 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 YPEL4Q96NS1 127 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 PLAC8Q9NZF1 115 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 TOMM7Q9P0U1 55 aa12.31□□□□□ -0.44
UPF1-212ENST00000601689 TINCRA0A1B0GVN0 87 aa12.3□□□□□ -0.44
UPF1-212ENST00000601689 PTTG1IPP53801 180 aa12.3□□□□□ -0.44
UPF1-212ENST00000601689 LINC00469Q8N7U9 141 aa12.3□□□□□ -0.44
UPF1-212ENST00000601689 ABCA13Q86UQ4 5058 aa12.29□□□□□ -0.44
UPF1-212ENST00000601689 A0A0J9YXV3 536 aa12.29□□□□□ -0.44
UPF1-212ENST00000601689 CHCHD1Q96BP2 118 aaKnown RBP12.29□□□□□ -0.44
UPF1-212ENST00000601689 CST9LQ9H4G1 147 aa12.29□□□□□ -0.44
UPF1-212ENST00000601689 TRBV30A0A0K0K1B3 111 aa12.28□□□□□ -0.44
UPF1-212ENST00000601689 H3BRM9 83 aa12.28□□□□□ -0.44
UPF1-212ENST00000601689 CDKN2A-AS1Q9UH64 79 aa12.28□□□□□ -0.44
UPF1-212ENST00000601689 UNQ6190/PRO20217Q6UXQ8 127 aa12.27□□□□□ -0.45
UPF1-212ENST00000601689 BAGE3Q86Y29 109 aa12.27□□□□□ -0.45
UPF1-212ENST00000601689 Q8IZM0 81 aa12.27□□□□□ -0.45
UPF1-212ENST00000601689 CXCL5P42830 114 aa12.26□□□□□ -0.45
UPF1-212ENST00000601689 VPS13BQ7Z7G8 4022 aa12.26□□□□□ -0.45
UPF1-212ENST00000601689 HSBP1O75506 76 aa12.25□□□□□ -0.45
UPF1-212ENST00000601689 KIAA0087Q14695 138 aa12.25□□□□□ -0.45
UPF1-212ENST00000601689 TRGC2P03986 189 aa12.24□□□□□ -0.45
UPF1-212ENST00000601689 TLX1NBP0CAT3 122 aa12.24□□□□□ -0.45
UPF1-212ENST00000601689 PMCHL1Q16048 86 aa12.24□□□□□ -0.45
UPF1-212ENST00000601689 PDZD11Q5EBL8 140 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms