RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CFAP161Q6P656 301 aa9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 Q6ZSA8 131 aa9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 IGHV1-58A0A0C4DH39 117 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 COX7A2LO14548 114 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 PMCHL1Q16048 86 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 SDIM1Q6ZPB5 146 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 ERASQ7Z444 233 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 SCGB3A1Q96QR1 104 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 TIMM17AQ99595 171 aa9.15□□□□□ -0.94
SHKBP1-217ENST00000598558 PANO1I0J062 215 aa9.14□□□□□ -0.95
SHKBP1-217ENST00000598558 TEX43Q6ZNM6 134 aa9.14□□□□□ -0.95
SHKBP1-217ENST00000598558 VCX2Q9H322 139 aa9.14□□□□□ -0.95
SHKBP1-217ENST00000598558 AP5S1Q9NUS5 200 aa9.14□□□□□ -0.95
SHKBP1-217ENST00000598558 NPSP0C0P6 89 aa9.13□□□□□ -0.95
SHKBP1-217ENST00000598558 G0S2P27469 103 aa9.12□□□□□ -0.95
SHKBP1-217ENST00000598558 FAT1Q14517 4588 aa9.12□□□□□ -0.95
SHKBP1-217ENST00000598558 IGLV4-69A0A075B6H9 119 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 A0A0J9YXV3 536 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 SMR3BP02814 79 aaPredicted RBP9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 MALP21145 153 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 LINC00310P59036 64 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 PDZD11Q5EBL8 140 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 Q6ZN92 141 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 FAM19A3Q7Z5A8 133 aa9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.11□□□□□ -0.95
SHKBP1-217ENST00000598558 IGHV3-64A0A075B6Q5 118 aa9.1□□□□□ -0.95
SHKBP1-217ENST00000598558 A0A087WZ39 114 aa9.1□□□□□ -0.95
SHKBP1-217ENST00000598558 CST9LQ9H4G1 147 aa9.1□□□□□ -0.95
SHKBP1-217ENST00000598558 NUPR1O60356 82 aa9.09□□□□□ -0.95
SHKBP1-217ENST00000598558 SCXQ7RTU7 201 aa9.09□□□□□ -0.95
SHKBP1-217ENST00000598558 Q8N1X5 172 aa9.09□□□□□ -0.95
SHKBP1-217ENST00000598558 C2orf88Q9BSF0 95 aa9.09□□□□□ -0.95
SHKBP1-217ENST00000598558 ZNF561-AS1K7EIQ3 104 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 HBDP02042 147 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 CHTF8P0CG12 524 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 RAB5BP61020 215 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 KIAA0087Q14695 138 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 Q6ZRU5 148 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 CIRBP-AS1Q8TBR5 109 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 CHAC1Q9BUX1 264 aa9.08□□□□□ -0.96
SHKBP1-217ENST00000598558 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 LINC01549A6NIU2 74 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 SPAG11BQ08648 103 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 SYCNQ0VAF6 134 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 PAPPA-AS1Q5QFB9 102 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 C10orf25Q5T742 122 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 ORAOV1Q8WV07 137 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 CHCHD1Q96BP2 118 aaKnown RBP9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 CDKN2A-AS1Q9UH64 79 aa9.07□□□□□ -0.96
SHKBP1-217ENST00000598558 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-217ENST00000598558 APOMO95445 188 aa9.06□□□□□ -0.96
SHKBP1-217ENST00000598558 PMVKQ15126 192 aa9.06□□□□□ -0.96
SHKBP1-217ENST00000598558 BAGE3Q86Y29 109 aa9.06□□□□□ -0.96
SHKBP1-217ENST00000598558 FAM19A2Q8N3H0 131 aa9.06□□□□□ -0.96
SHKBP1-217ENST00000598558 ABCA13Q86UQ4 5058 aa9.05□□□□□ -0.96
SHKBP1-217ENST00000598558 SERF1AO75920 110 aa9.05□□□□□ -0.96
SHKBP1-217ENST00000598558 CIRBPQ14011 172 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-217ENST00000598558 OR10D4PQ8NGN7 298 aa9.05□□□□□ -0.96
SHKBP1-217ENST00000598558 C2orf48Q96LS8 159 aa9.05□□□□□ -0.96
SHKBP1-217ENST00000598558 CARD19Q96LW7 228 aa9.05□□□□□ -0.96
SHKBP1-217ENST00000598558 TINCRA0A1B0GVN0 87 aa9.04□□□□□ -0.96
SHKBP1-217ENST00000598558 UNQ6190/PRO20217Q6UXQ8 127 aa9.04□□□□□ -0.96
SHKBP1-217ENST00000598558 LINC01561Q8N1V8 128 aa9.04□□□□□ -0.96
SHKBP1-217ENST00000598558 CAMK2N2Q96S95 79 aa9.04□□□□□ -0.96
SHKBP1-217ENST00000598558 IGLV5-45A0A087WSX0 123 aa9.03□□□□□ -0.96
SHKBP1-217ENST00000598558 A0A096LNI7 61 aa9.03□□□□□ -0.96
SHKBP1-217ENST00000598558 HERVK_113P63121 156 aa9.03□□□□□ -0.96
SHKBP1-217ENST00000598558 ATP6V1G1O75348 118 aa9.02□□□□□ -0.97
SHKBP1-217ENST00000598558 NDUFA6P56556 154 aa9.02□□□□□ -0.97
SHKBP1-217ENST00000598558 C2orf82Q6UX34 121 aa9.02□□□□□ -0.97
SHKBP1-217ENST00000598558 SPACA4Q8TDM5 124 aa9.02□□□□□ -0.97
SHKBP1-217ENST00000598558 GEMIN7Q9H840 131 aaKnown RBP9.02□□□□□ -0.97
SHKBP1-217ENST00000598558 IGKV2-24A0A0C4DH68 120 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 SMIM1B2RUZ4 78 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BKO60814 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HSBP1O75506 76 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 ATP5LO75964 103 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BJP06899 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BOP23527 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BBP33778 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BDP58876 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BCP62807 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 SEC11AP67812 179 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST2H2BEQ16778 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 LINC00469Q8N7U9 141 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BHQ93079 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BNQ99877 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 HIST1H2BMQ99879 126 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 C6orf48Q9UBA6 75 aa9.01□□□□□ -0.97
SHKBP1-217ENST00000598558 A0A087WYN8 130 aa9□□□□□ -0.97
SHKBP1-217ENST00000598558 IGLC3P0DOY3 106 aa9□□□□□ -0.97
SHKBP1-217ENST00000598558 Q5VSD8 79 aa9□□□□□ -0.97
SHKBP1-217ENST00000598558 IFI27L1Q96BM0 104 aa9□□□□□ -0.97
SHKBP1-217ENST00000598558 SPINK8P0C7L1 97 aa8.99□□□□□ -0.97
SHKBP1-217ENST00000598558 MRPL35Q9NZE8 188 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-217ENST00000598558 TOMM7Q9P0U1 55 aa8.99□□□□□ -0.97
SHKBP1-217ENST00000598558 C11orf86A6NJI1 115 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 EPM2AB3EWF7 344 aa8.98□□□□□ -0.97
SHKBP1-217ENST00000598558 NDUFA1O15239 70 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms