RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 KRTAP10-1P60331 282 aa13.22□□□□□ -0.29
PNKP-211ENST00000598020 PDZD11Q5EBL8 140 aa13.22□□□□□ -0.29
PNKP-211ENST00000598020 ZC2HC1BQ5TFG8 222 aa13.22□□□□□ -0.29
PNKP-211ENST00000598020 BAGE3Q86Y29 109 aa13.22□□□□□ -0.29
PNKP-211ENST00000598020 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.21□□□□□ -0.29
PNKP-211ENST00000598020 MALP21145 153 aa13.2□□□□□ -0.3
PNKP-211ENST00000598020 PMCHL1Q16048 86 aa13.2□□□□□ -0.3
PNKP-211ENST00000598020 C5orf38Q86SI9 138 aa13.2□□□□□ -0.3
PNKP-211ENST00000598020 CDK2AP2O75956 126 aa13.19□□□□□ -0.3
PNKP-211ENST00000598020 SLPIP03973 132 aa13.19□□□□□ -0.3
PNKP-211ENST00000598020 SEC11AP67812 179 aa13.19□□□□□ -0.3
PNKP-211ENST00000598020 C9orf163Q8N9P6 203 aa13.19□□□□□ -0.3
PNKP-211ENST00000598020 A0A087WZ39 114 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 ATP5LO75964 103 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 APOMO95445 188 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 COX6A2Q02221 97 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 PMVKQ15126 192 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 HIGD2BQ4VC39 106 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 CST9LQ9H4G1 147 aa13.18□□□□□ -0.3
PNKP-211ENST00000598020 HSBP1O75506 76 aa13.17□□□□□ -0.3
PNKP-211ENST00000598020 LINC00310P59036 64 aa13.17□□□□□ -0.3
PNKP-211ENST00000598020 LINC01561Q8N1V8 128 aa13.17□□□□□ -0.3
PNKP-211ENST00000598020 KIAA1109Q2LD37 5005 aa13.17□□□□□ -0.3
PNKP-211ENST00000598020 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.16□□□□□ -0.3
PNKP-211ENST00000598020 IGHV3-64A0A075B6Q5 118 aa13.15□□□□□ -0.3
PNKP-211ENST00000598020 SERF1AO75920 110 aa13.15□□□□□ -0.3
PNKP-211ENST00000598020 HERVK_113P63121 156 aa13.15□□□□□ -0.3
PNKP-211ENST00000598020 OR10D4PQ8NGN7 298 aa13.15□□□□□ -0.3
PNKP-211ENST00000598020 ZNF561-AS1K7EIQ3 104 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BKO60814 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BJP06899 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BOP23527 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BBP33778 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BDP58876 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BCP62807 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST2H2BEQ16778 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 LINC01620Q4KN68 170 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BHQ93079 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BNQ99877 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 HIST1H2BMQ99879 126 aa13.14□□□□□ -0.31
PNKP-211ENST00000598020 A0A0J9YXV3 536 aa13.13□□□□□ -0.31
PNKP-211ENST00000598020 TINCRA0A1B0GVN0 87 aa13.13□□□□□ -0.31
PNKP-211ENST00000598020 Q6ZSA8 131 aa13.13□□□□□ -0.31
PNKP-211ENST00000598020 FAM19A2Q8N3H0 131 aa13.12□□□□□ -0.31
PNKP-211ENST00000598020 C2orf48Q96LS8 159 aa13.12□□□□□ -0.31
PNKP-211ENST00000598020 GEMIN7Q9H840 131 aaKnown RBP13.12□□□□□ -0.31
PNKP-211ENST00000598020 IGLV4-69A0A075B6H9 119 aa13.11□□□□□ -0.31
PNKP-211ENST00000598020 IGLV5-45A0A087WSX0 123 aa13.11□□□□□ -0.31
PNKP-211ENST00000598020 LINC00526Q96FQ7 95 aa13.11□□□□□ -0.31
PNKP-211ENST00000598020 APOBP04114 4563 aaKnown RBP13.1□□□□□ -0.31
PNKP-211ENST00000598020 F8WDY8 70 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 NUPR1O60356 82 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 SPAG11BQ08648 103 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 SDIM1Q6ZPB5 146 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 ORAOV1Q8WV07 137 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 IFI27L1Q96BM0 104 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 FAM30AQ9NZY2 134 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 CDKN2A-AS1Q9UH64 79 aa13.1□□□□□ -0.31
PNKP-211ENST00000598020 RYR1P21817 5038 aa13.09□□□□□ -0.31
PNKP-211ENST00000598020 DNAH8Q96JB1 4490 aa13.09□□□□□ -0.31
PNKP-211ENST00000598020 IGLC3P0DOY3 106 aa13.09□□□□□ -0.31
PNKP-211ENST00000598020 XGP55808 180 aa13.09□□□□□ -0.31
PNKP-211ENST00000598020 SYCNQ0VAF6 134 aa13.09□□□□□ -0.31
PNKP-211ENST00000598020 TRAV12-1A0A0B4J245 112 aa13.07□□□□□ -0.32
PNKP-211ENST00000598020 NDUFA6P56556 154 aa13.07□□□□□ -0.32
PNKP-211ENST00000598020 KIAA0087Q14695 138 aa13.07□□□□□ -0.32
PNKP-211ENST00000598020 CARD19Q96LW7 228 aa13.07□□□□□ -0.32
PNKP-211ENST00000598020 LEPROTL1O95214 131 aa13.06□□□□□ -0.32
PNKP-211ENST00000598020 LINC00469Q8N7U9 141 aa13.06□□□□□ -0.32
PNKP-211ENST00000598020 CAMK2N2Q96S95 79 aa13.06□□□□□ -0.32
PNKP-211ENST00000598020 COA6Q5JTJ3 125 aaKnown RBP13.05□□□□□ -0.32
PNKP-211ENST00000598020 RNF151Q2KHN1 245 aa13.04□□□□□ -0.32
PNKP-211ENST00000598020 Q6ZRU5 148 aa13.04□□□□□ -0.32
PNKP-211ENST00000598020 CHAC1Q9BUX1 264 aa13.04□□□□□ -0.32
PNKP-211ENST00000598020 PKIGQ9Y2B9 76 aa13.04□□□□□ -0.32
PNKP-211ENST00000598020 PACRGQ96M98 296 aaPredicted RBP13.03□□□□□ -0.32
PNKP-211ENST00000598020 MRPL35Q9NZE8 188 aaKnown RBP13.03□□□□□ -0.32
PNKP-211ENST00000598020 HSPB8Q9UJY1 196 aa13.03□□□□□ -0.32
PNKP-211ENST00000598020 SMIM1B2RUZ4 78 aa13.02□□□□□ -0.33
PNKP-211ENST00000598020 NDUFA1O15239 70 aa13.02□□□□□ -0.33
PNKP-211ENST00000598020 CIRBPQ14011 172 aaKnown RBP13.02□□□□□ -0.33
PNKP-211ENST00000598020 Q8IZM0 81 aa13.02□□□□□ -0.33
PNKP-211ENST00000598020 CHTOPQ9Y3Y2 248 aaKnown RBP13.02□□□□□ -0.33
PNKP-211ENST00000598020 HERC2O95714 4834 aa13.02□□□□□ -0.33
PNKP-211ENST00000598020 HSPG2P98160 4391 aa13.02□□□□□ -0.33
PNKP-211ENST00000598020 H3BRM9 83 aa13.01□□□□□ -0.33
PNKP-211ENST00000598020 ZNF22P17026 224 aaPredicted RBP13□□□□□ -0.33
PNKP-211ENST00000598020 C11orf86A6NJI1 115 aa12.99□□□□□ -0.33
PNKP-211ENST00000598020 PRSS2P07478 247 aa12.99□□□□□ -0.33
PNKP-211ENST00000598020 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.99□□□□□ -0.33
PNKP-211ENST00000598020 F8VRH5 84 aa12.98□□□□□ -0.33
PNKP-211ENST00000598020 FABP4P15090 132 aa12.98□□□□□ -0.33
PNKP-211ENST00000598020 C6orf226Q5I0X4 101 aa12.98□□□□□ -0.33
PNKP-211ENST00000598020 C10orf25Q5T742 122 aa12.98□□□□□ -0.33
PNKP-211ENST00000598020 UNQ6190/PRO20217Q6UXQ8 127 aa12.98□□□□□ -0.33
PNKP-211ENST00000598020 SCXQ7RTU7 201 aa12.98□□□□□ -0.33
PNKP-211ENST00000598020 TRBV30A0A0K0K1B3 111 aa12.97□□□□□ -0.33
PNKP-211ENST00000598020 PANO1I0J062 215 aa12.97□□□□□ -0.33
PNKP-211ENST00000598020 CIRBP-AS1Q8TBR5 109 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms