RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.79□□□□□ -1.16
VPS4B-206ENST00000591475 Q9H8V8 135 aa7.79□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE12JA6NER3 117 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 B5MCH6 92 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE7O76087 117 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE12FP0CL80 117 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE12GP0CL81 117 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE12IP0CL82 117 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 GAGE4Q13068 117 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 LINC00242Q5T6M2 205 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 FAM19A3Q7Z5A8 133 aa7.78□□□□□ -1.16
VPS4B-206ENST00000591475 SS18L2Q9UHA2 77 aa7.77□□□□□ -1.17
VPS4B-206ENST00000591475 SETD2Q9BYW2 2564 aaPredicted RBP7.77□□□□□ -1.17
VPS4B-206ENST00000591475 COX7A2LO14548 114 aa7.76□□□□□ -1.17
VPS4B-206ENST00000591475 C4orf3Q8WVX3 66 aa7.76□□□□□ -1.17
VPS4B-206ENST00000591475 SMIM1B2RUZ4 78 aa7.76□□□□□ -1.17
VPS4B-206ENST00000591475 DEFB114Q30KQ6 69 aa7.76□□□□□ -1.17
VPS4B-206ENST00000591475 ZNF625Q96I27 306 aaPredicted RBP7.76□□□□□ -1.17
VPS4B-206ENST00000591475 CSDC2Q9Y534 153 aaKnown RBP7.76□□□□□ -1.17
VPS4B-206ENST00000591475 TEP1Q99973 2627 aaKnown RBP7.76□□□□□ -1.17
VPS4B-206ENST00000591475 A0A0U1RRA0 63 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 ACYP1P07311 99 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 RPL36AP83881 106 aaKnown RBP7.75□□□□□ -1.17
VPS4B-206ENST00000591475 KHDC1LQ5JSQ8 128 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 MEIG1Q5JSS6 88 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 PRIMA1Q86XR5 153 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 SVIPQ8NHG7 77 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 RPL36ALQ969Q0 106 aaKnown RBP7.75□□□□□ -1.17
VPS4B-206ENST00000591475 XCL2Q9UBD3 114 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 JMJD1CQ15652 2540 aa7.75□□□□□ -1.17
VPS4B-206ENST00000591475 TRGV1A0A0A0MS02 117 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 CCDC179H3BU77 68 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 LINC00694P0DN24 101 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 SHISA2Q6UWI4 295 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 C2CD3Q4AC94 2353 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 TRAV13-1A0A0B4J241 112 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 TRBV10-1A0A0K0K1A3 114 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 K7EQD1 137 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 HERV-K104P63124 156 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 DAZ2Q13117 558 aaKnown RBP7.74□□□□□ -1.17
VPS4B-206ENST00000591475 SOSTDC1Q6X4U4 206 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 DAZ4Q86SG3 579 aaKnown RBP7.74□□□□□ -1.17
VPS4B-206ENST00000591475 IL17DQ8TAD2 202 aa7.74□□□□□ -1.17
VPS4B-206ENST00000591475 DAZ3Q9NR90 486 aaKnown RBP7.74□□□□□ -1.17
VPS4B-206ENST00000591475 TRBV7-7A0A0K0K1E9 115 aa7.73□□□□□ -1.17
VPS4B-206ENST00000591475 STHQ8IWL8 128 aa7.73□□□□□ -1.17
VPS4B-206ENST00000591475 PPDPFQ9H3Y8 114 aa7.73□□□□□ -1.17
VPS4B-206ENST00000591475 TRACP01848 142 aa7.73□□□□□ -1.17
VPS4B-206ENST00000591475 C1orf158Q8N1D5 194 aa7.73□□□□□ -1.17
VPS4B-206ENST00000591475 F5H768 121 aa7.72□□□□□ -1.17
VPS4B-206ENST00000591475 NTM-AS1Q6ZSK4 140 aa7.72□□□□□ -1.17
VPS4B-206ENST00000591475 C11orf44Q8N8P7 122 aa7.72□□□□□ -1.17
VPS4B-206ENST00000591475 CDC42SE2Q9NRR3 84 aa7.72□□□□□ -1.17
VPS4B-206ENST00000591475 TRAV25A0A0B4J276 109 aa7.71□□□□□ -1.17
VPS4B-206ENST00000591475 ODF3L2Q3SX64 289 aa7.71□□□□□ -1.17
VPS4B-206ENST00000591475 UBE2L6O14933 153 aa7.7□□□□□ -1.18
VPS4B-206ENST00000591475 Q6ZTI0 123 aa7.7□□□□□ -1.18
VPS4B-206ENST00000591475 IMUPQ9GZP8 106 aa7.7□□□□□ -1.18
VPS4B-206ENST00000591475 BAALC-AS2P0C853 105 aa7.69□□□□□ -1.18
VPS4B-206ENST00000591475 TMEM243Q9BU79 118 aa7.69□□□□□ -1.18
VPS4B-206ENST00000591475 ATRQ13535 2644 aa7.69□□□□□ -1.18
VPS4B-206ENST00000591475 PF4P02776 101 aa7.69□□□□□ -1.18
VPS4B-206ENST00000591475 TRAV13-2A0A0B4J235 113 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 A0A1W2PRX2 142 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 FAM222AQ5U5X8 452 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 HIST2H2BDQ6DRA6 164 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 CCL24O00175 119 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 LINC00643Q86TS7 51 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 CHCHD5Q9BSY4 110 aa7.68□□□□□ -1.18
VPS4B-206ENST00000591475 CRPP02741 224 aa7.67□□□□□ -1.18
VPS4B-206ENST00000591475 RPL28P46779 137 aaKnown RBP7.67□□□□□ -1.18
VPS4B-206ENST00000591475 COX7B2Q8TF08 81 aa7.67□□□□□ -1.18
VPS4B-206ENST00000591475 INAFM2P0DMQ5 153 aa7.66□□□□□ -1.18
VPS4B-206ENST00000591475 KRTAP10-3P60369 221 aa7.66□□□□□ -1.18
VPS4B-206ENST00000591475 SMCR5Q8TEV8 140 aa7.66□□□□□ -1.18
VPS4B-206ENST00000591475 FAM218AQ96MZ4 157 aa7.66□□□□□ -1.18
VPS4B-206ENST00000591475 NOP10Q9NPE3 64 aaKnown RBP7.66□□□□□ -1.18
VPS4B-206ENST00000591475 TENM1Q9UKZ4 2725 aa7.66□□□□□ -1.18
VPS4B-206ENST00000591475 FAM236AA0A1B0GUQ0 79 aa7.65□□□□□ -1.18
VPS4B-206ENST00000591475 FAM236BA0A1B0GV22 79 aa7.65□□□□□ -1.18
VPS4B-206ENST00000591475 MIR7-3HGQ8N6C7 128 aa7.65□□□□□ -1.18
VPS4B-206ENST00000591475 OVOL2Q9BRP0 275 aa7.65□□□□□ -1.18
VPS4B-206ENST00000591475 C22orf24Q9Y442 160 aa7.65□□□□□ -1.18
VPS4B-206ENST00000591475 MALP21145 153 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 KRTAP24-1Q3LI83 254 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 SDIM1Q6ZPB5 146 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 SND1-IT1Q9HBX3 110 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 TRGV2A0A075B6R0 118 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 C16orf74Q96GX8 76 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 TOMM7Q9P0U1 55 aa7.64□□□□□ -1.19
VPS4B-206ENST00000591475 FBN1P35555 2871 aaKnown RBP7.64□□□□□ -1.19
VPS4B-206ENST00000591475 TRBV6-4A0A1B0GX49 114 aa7.63□□□□□ -1.19
VPS4B-206ENST00000591475 CMC4P56277 68 aaPredicted RBP7.63□□□□□ -1.19
VPS4B-206ENST00000591475 LINC00337Q8N6G1 96 aa7.63□□□□□ -1.19
VPS4B-206ENST00000591475 Q9HAA7 133 aa7.63□□□□□ -1.19
VPS4B-206ENST00000591475 IGKV2-28A0A075B6P5 120 aa7.62□□□□□ -1.19
VPS4B-206ENST00000591475 LOC100131303A0A0U1RQF7 123 aa7.62□□□□□ -1.19
VPS4B-206ENST00000591475 IGKV2D-28P01615 120 aa7.62□□□□□ -1.19
VPS4B-206ENST00000591475 LINC00158P58513 81 aa7.62□□□□□ -1.19
VPS4B-206ENST00000591475 GAGE2AQ6NT46 116 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms