RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SEC11CQ9BY50 192 aa6.69□□□□□ -1.34
LIG3-212ENST00000590181 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.69□□□□□ -1.34
LIG3-212ENST00000590181 RNF213Q63HN8 5207 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 A0A087WYN8 130 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 TRAV13-1A0A0B4J241 112 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 TMEM218A2RU14 115 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 NPYP01303 97 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 S100PP25815 95 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 COX6A2Q02221 97 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 Q6ZRU5 148 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 LINC01561Q8N1V8 128 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 Q8N8P6 123 aa6.68□□□□□ -1.34
LIG3-212ENST00000590181 LOC107984640A0A0U1RRK4 108 aa6.67□□□□□ -1.34
LIG3-212ENST00000590181 SEC11AP67812 179 aa6.67□□□□□ -1.34
LIG3-212ENST00000590181 HIGD2BQ4VC39 106 aa6.67□□□□□ -1.34
LIG3-212ENST00000590181 TMEM141Q96I45 108 aa6.67□□□□□ -1.34
LIG3-212ENST00000590181 CYSLTR1Q9Y271 337 aa6.67□□□□□ -1.34
LIG3-212ENST00000590181 TGIF2-C20orf24A0A0A6YYL0 155 aa6.66□□□□□ -1.34
LIG3-212ENST00000590181 IGHV3OR16-9A0A0B4J2B5 98 aa6.66□□□□□ -1.34
LIG3-212ENST00000590181 Q6ZN92 141 aa6.66□□□□□ -1.34
LIG3-212ENST00000590181 C2orf88Q9BSF0 95 aa6.66□□□□□ -1.34
LIG3-212ENST00000590181 IFITM10A6NMD0 228 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 MT-ND6P03923 174 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 RPL39P62891 51 aaKnown RBP6.65□□□□□ -1.34
LIG3-212ENST00000590181 MAJINQ3KP22 176 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 TEX43Q6ZNM6 134 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 PRSS3P2Q8NHM4 247 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 CAMK2N2Q96S95 79 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 GNB1LQ9BYB4 327 aa6.65□□□□□ -1.34
LIG3-212ENST00000590181 LRP2P98164 4655 aa6.65□□□□□ -1.35
LIG3-212ENST00000590181 TNXBP22105 4242 aa6.65□□□□□ -1.35
LIG3-212ENST00000590181 A0A087WZ39 114 aa6.64□□□□□ -1.35
LIG3-212ENST00000590181 Q6ZUT4 128 aa6.64□□□□□ -1.35
LIG3-212ENST00000590181 STPG4Q8N801 248 aa6.64□□□□□ -1.35
LIG3-212ENST00000590181 VCX2Q9H322 139 aa6.64□□□□□ -1.35
LIG3-212ENST00000590181 MRPL35Q9NZE8 188 aaKnown RBP6.64□□□□□ -1.35
LIG3-212ENST00000590181 PANO1I0J062 215 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 NDUFA1O15239 70 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 PTTG1IPP53801 180 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 RHEBQ15382 184 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 C10orf91Q5T1B1 145 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 C2orf66Q6UXQ4 117 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 FAM19A3Q7Z5A8 133 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 FAM104AQ969W3 186 aa6.63□□□□□ -1.35
LIG3-212ENST00000590181 TLX1NBP0CAT3 122 aa6.62□□□□□ -1.35
LIG3-212ENST00000590181 IFITM2Q01629 132 aa6.62□□□□□ -1.35
LIG3-212ENST00000590181 ODF1Q14990 250 aa6.62□□□□□ -1.35
LIG3-212ENST00000590181 C5orf38Q86SI9 138 aa6.62□□□□□ -1.35
LIG3-212ENST00000590181 AMELXQ99217 191 aa6.62□□□□□ -1.35
LIG3-212ENST00000590181 TIMM17AQ99595 171 aa6.62□□□□□ -1.35
LIG3-212ENST00000590181 IGLV4-3A0A075B6K6 122 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 A0A096LNI7 61 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 IGKV2-24A0A0C4DH68 120 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 TRBV30A0A0K0K1B3 111 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 LOC389332A0A1B0GUA5 103 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 HNRNPA3P51991 378 aaKnown RBP6.61□□□□□ -1.35
LIG3-212ENST00000590181 SPAG11BQ08648 103 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 RNASE13Q5GAN3 156 aaKnown RBP6.61□□□□□ -1.35
LIG3-212ENST00000590181 LINC00242Q5T6M2 205 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 ORAOV1Q8WV07 137 aa6.61□□□□□ -1.35
LIG3-212ENST00000590181 CARHSP1Q9Y2V2 147 aaKnown RBP6.61□□□□□ -1.35
LIG3-212ENST00000590181 LINC01546A6NGU7 62 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 IGIPA6NJ69 53 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 CHTF8P0CG12 524 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 UBE2D1P51668 147 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 HERVK_113P63121 156 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 Q6ZRP5 223 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 ERASQ7Z444 233 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 TOMM6Q96B49 74 aa6.6□□□□□ -1.35
LIG3-212ENST00000590181 ADCYAP1P18509 176 aa6.59□□□□□ -1.35
LIG3-212ENST00000590181 NDUFA5Q16718 116 aa6.59□□□□□ -1.35
LIG3-212ENST00000590181 COMMD7Q86VX2 200 aa6.59□□□□□ -1.35
LIG3-212ENST00000590181 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.58□□□□□ -1.36
LIG3-212ENST00000590181 GAGE2BQ13066 116 aa6.58□□□□□ -1.36
LIG3-212ENST00000590181 SPINK6Q6UWN8 80 aa6.58□□□□□ -1.36
LIG3-212ENST00000590181 LINC00526Q96FQ7 95 aa6.58□□□□□ -1.36
LIG3-212ENST00000590181 OPRPNQ99935 248 aaPredicted RBP6.58□□□□□ -1.36
LIG3-212ENST00000590181 SNAPINO95295 136 aa6.57□□□□□ -1.36
LIG3-212ENST00000590181 PRSS2P07478 247 aa6.57□□□□□ -1.36
LIG3-212ENST00000590181 MT1HL1P0DM35 61 aa6.57□□□□□ -1.36
LIG3-212ENST00000590181 PRR3P79522 188 aaKnown RBP6.57□□□□□ -1.36
LIG3-212ENST00000590181 REG3GQ6UW15 175 aa6.57□□□□□ -1.36
LIG3-212ENST00000590181 Q8IZM0 81 aa6.57□□□□□ -1.36
LIG3-212ENST00000590181 PACRGQ96M98 296 aaPredicted RBP6.57□□□□□ -1.36
LIG3-212ENST00000590181 ALKBH7Q9BT30 221 aaPredicted RBP6.57□□□□□ -1.36
LIG3-212ENST00000590181 CXCL5P42830 114 aa6.56□□□□□ -1.36
LIG3-212ENST00000590181 KIAA0087Q14695 138 aa6.56□□□□□ -1.36
LIG3-212ENST00000590181 C6orf226Q5I0X4 101 aa6.56□□□□□ -1.36
LIG3-212ENST00000590181 SVBPQ8N300 66 aa6.56□□□□□ -1.36
LIG3-212ENST00000590181 SCGB3A1Q96QR1 104 aa6.56□□□□□ -1.36
LIG3-212ENST00000590181 GEMIN7Q9H840 131 aaKnown RBP6.56□□□□□ -1.36
LIG3-212ENST00000590181 RPS10P5Q9NQ39 176 aa6.56□□□□□ -1.36
LIG3-212ENST00000590181 NDUFC2-KCTD14E9PQ53 114 aa6.55□□□□□ -1.36
LIG3-212ENST00000590181 RAB5BP61020 215 aa6.55□□□□□ -1.36
LIG3-212ENST00000590181 CKS1BP61024 79 aa6.55□□□□□ -1.36
LIG3-212ENST00000590181 RPL18AQ02543 176 aaKnown RBP6.55□□□□□ -1.36
LIG3-212ENST00000590181 FABP9Q0Z7S8 132 aa6.55□□□□□ -1.36
LIG3-212ENST00000590181 LINC00173Q6ZV60 143 aa6.55□□□□□ -1.36
LIG3-212ENST00000590181 MRPL18Q9H0U6 180 aaKnown RBP6.55□□□□□ -1.36
LIG3-212ENST00000590181 SMCO4Q9NRQ5 59 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms