RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 MRPL52Q86TS9 123 aaKnown RBP3.61□□□□□ -1.83
LIG3-210ENST00000588109 ZNF664Q8N3J9 261 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 IFI27L1Q96BM0 104 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 TIMM17AQ99595 171 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 HIST1H2BLQ99880 126 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 OPRPNQ99935 248 aaPredicted RBP3.61□□□□□ -1.83
LIG3-210ENST00000588109 C2orf88Q9BSF0 95 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 TIMM21Q9BVV7 248 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 TM2D2Q9BX73 214 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 MAP1LC3CQ9BXW4 147 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 Q9H8V8 135 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 PYGO1Q9Y3Y4 419 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 IGLV4-60A0A075B6I1 120 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 IGLV4-3A0A075B6K6 122 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 A0A1B0GUV1 79 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 IFITM10A6NMD0 228 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 PRYO14603 147 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 DNAH10OSP0CZ25 163 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 KRTDAPP60985 99 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 MRPS36P82909 103 aaKnown RBP3.6□□□□□ -1.83
LIG3-210ENST00000588109 LINC01556Q5JQF7 62 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 C10orf25Q5T742 122 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 LGALS9CQ6DKI2 356 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 TEX43Q6ZNM6 134 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 LINC00173Q6ZV60 143 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 LINC00269Q8N2A0 174 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 BAALCQ8WXS3 180 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 PACRGQ96M98 296 aaPredicted RBP3.6□□□□□ -1.83
LIG3-210ENST00000588109 CDC42SE2Q9NRR3 84 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 KLK12Q9UKR0 248 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 CSDC2Q9Y534 153 aaKnown RBP3.6□□□□□ -1.83
LIG3-210ENST00000588109 CSMD3Q7Z407 3707 aa3.6□□□□□ -1.83
LIG3-210ENST00000588109 PLECQ15149 4684 aaKnown RBP3.59□□□□□ -1.83
LIG3-210ENST00000588109 TRAV13-1A0A0B4J241 112 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 C20orf202A1L168 122 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 SYS1-DBNDD2H3BUS1 97 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 IGKV2-30P06310 120 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 REG3AQ06141 175 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 PMVKQ15126 192 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 TTC32Q5I0X7 151 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 ZC2HC1BQ5TFG8 222 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 C10orf126Q8N4M7 172 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 UBE2WQ96B02 151 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 Q9HAA7 133 aa3.59□□□□□ -1.83
LIG3-210ENST00000588109 STARD9Q9P2P6 4700 aa3.59□□□□□ -1.84
LIG3-210ENST00000588109 IGLV10-54A0A075B6I4 117 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 A0A0A0MQY5 61 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 K7EP13 123 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 C3orf79P0CE67 100 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 AKR1D1P51857 326 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 SS18Q15532 418 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 MIAQ16674 131 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 OR10D4PQ8NGN7 298 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 MPLKIPQ8TAP9 179 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 AMELXQ99217 191 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 CST9LQ9H4G1 147 aa3.58□□□□□ -1.84
LIG3-210ENST00000588109 GEMIN7Q9H840 131 aaKnown RBP3.58□□□□□ -1.84
LIG3-210ENST00000588109 IGKV2D-24A0A075B6R9 120 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 TRAV8-3A0A0A6YYJ7 113 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 TRAV12-1A0A0B4J245 112 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 TRAV8-4A0A0B4J246 113 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 NBDYA0A0U1RRE5 68 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 LINC00959A0A1B0GUT2 108 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 IBA57-AS1B1ANH7 110 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 F8VRH5 84 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 M0R2N4 97 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 XCL1P47992 114 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 UBE2D1P51668 147 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 SEC11AP67812 179 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 ENHOQ6UWT2 76 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 FAM104AQ969W3 186 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 RMI2Q96E14 147 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 PMCHL2Q9BQD1 86 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 CHAC1Q9BUX1 264 aa3.57□□□□□ -1.84
LIG3-210ENST00000588109 MRPL35Q9NZE8 188 aaKnown RBP3.57□□□□□ -1.84
LIG3-210ENST00000588109 ALMS1Q8TCU4 4167 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 A0A0J9YXV3 536 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 PCP4L1A6NKN8 68 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 CCL25O15444 150 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 DPM2O94777 84 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 PLNP26678 52 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 SEC61GP60059 68 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 HERVK_113P63121 156 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 SPATA12Q7Z6I5 190 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 CHCHD10Q8WYQ3 142 aaPredicted RBP3.56□□□□□ -1.84
LIG3-210ENST00000588109 LYSTQ99698 3801 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 KRTAP9-8Q9BYQ0 159 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 PRR34Q9NV39 138 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 TENM2Q9NT68 2774 aa3.56□□□□□ -1.84
LIG3-210ENST00000588109 VPS13DQ5THJ4 4388 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 IGLV4-69A0A075B6H9 119 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 TINCRA0A1B0GVN0 87 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 H3BRM9 83 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 COX7A2LO14548 114 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 PSCAO43653 123 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 IGKCP01834 107 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 IGLC3P0DOY3 106 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 TMEM170BQ5T4T1 132 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 LINC00242Q5T6M2 205 aa3.55□□□□□ -1.84
LIG3-210ENST00000588109 LINC01545Q5VT33 79 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms