RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 PRSS3P2Q8NHM4 247 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 SPACA4Q8TDM5 124 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 DPH3Q96FX2 82 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 CDC42SE2Q9NRR3 84 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 SPANXA1Q9NS26 97 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 UBE2D4Q9Y2X8 147 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 PYGO1Q9Y3Y4 419 aa8.59□□□□□ -1.03
SS18-222ENST00000582792 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.58□□□□□ -1.04
SS18-222ENST00000582792 SLPIP03973 132 aa8.58□□□□□ -1.04
SS18-222ENST00000582792 NPSP0C0P6 89 aa8.58□□□□□ -1.04
SS18-222ENST00000582792 ZNF664Q8N3J9 261 aa8.58□□□□□ -1.04
SS18-222ENST00000582792 AP5S1Q9NUS5 200 aa8.58□□□□□ -1.04
SS18-222ENST00000582792 MRPS36P82909 103 aaKnown RBP8.57□□□□□ -1.04
SS18-222ENST00000582792 C18orf32Q8TCD1 76 aa8.57□□□□□ -1.04
SS18-222ENST00000582792 PLAC8Q9NZF1 115 aa8.57□□□□□ -1.04
SS18-222ENST00000582792 CYSLTR1Q9Y271 337 aa8.57□□□□□ -1.04
SS18-222ENST00000582792 CCL25O15444 150 aa8.56□□□□□ -1.04
SS18-222ENST00000582792 ATP6V1G1O75348 118 aa8.56□□□□□ -1.04
SS18-222ENST00000582792 RAB5BP61020 215 aa8.56□□□□□ -1.04
SS18-222ENST00000582792 RPL39P62891 51 aaKnown RBP8.56□□□□□ -1.04
SS18-222ENST00000582792 FA2HQ7L5A8 372 aa8.56□□□□□ -1.04
SS18-222ENST00000582792 C7orf33Q8WU49 177 aa8.56□□□□□ -1.04
SS18-222ENST00000582792 LINC01600Q96MT4 127 aa8.56□□□□□ -1.04
SS18-222ENST00000582792 C2orf66Q6UXQ4 117 aa8.55□□□□□ -1.04
SS18-222ENST00000582792 SCO1O75880 301 aa8.54□□□□□ -1.04
SS18-222ENST00000582792 TRGC2P03986 189 aa8.54□□□□□ -1.04
SS18-222ENST00000582792 TOMM6Q96B49 74 aa8.54□□□□□ -1.04
SS18-222ENST00000582792 LINC00959A0A1B0GUT2 108 aa8.53□□□□□ -1.04
SS18-222ENST00000582792 LINC00614P0C842 121 aa8.53□□□□□ -1.04
SS18-222ENST00000582792 FAM104AQ969W3 186 aa8.53□□□□□ -1.04
SS18-222ENST00000582792 TIMM17AQ99595 171 aa8.53□□□□□ -1.04
SS18-222ENST00000582792 IGIPA6NJ69 53 aa8.52□□□□□ -1.05
SS18-222ENST00000582792 PAPPA-AS1Q5QFB9 102 aa8.52□□□□□ -1.05
SS18-222ENST00000582792 Q6ZUT4 128 aa8.52□□□□□ -1.05
SS18-222ENST00000582792 URB1-AS1Q96HZ7 61 aa8.52□□□□□ -1.05
SS18-222ENST00000582792 IGLV4-3A0A075B6K6 122 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 C1orf196B1AJZ1 125 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 PRR3P79522 188 aaKnown RBP8.51□□□□□ -1.05
SS18-222ENST00000582792 COX6A2Q02221 97 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 ODF1Q14990 250 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 SS18Q15532 418 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 C15orf56Q8N910 161 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 CHCHD1Q96BP2 118 aaKnown RBP8.51□□□□□ -1.05
SS18-222ENST00000582792 TMEM141Q96I45 108 aa8.51□□□□□ -1.05
SS18-222ENST00000582792 A0A0J9YXV3 536 aa8.5□□□□□ -1.05
SS18-222ENST00000582792 MAJINQ3KP22 176 aa8.5□□□□□ -1.05
SS18-222ENST00000582792 ERASQ7Z444 233 aa8.5□□□□□ -1.05
SS18-222ENST00000582792 CHCHD10Q8WYQ3 142 aaPredicted RBP8.5□□□□□ -1.05
SS18-222ENST00000582792 AMELXQ99217 191 aa8.5□□□□□ -1.05
SS18-222ENST00000582792 IGKV3OR2-268A0A0C4DH90 116 aa8.49□□□□□ -1.05
SS18-222ENST00000582792 CFAP161Q6P656 301 aa8.49□□□□□ -1.05
SS18-222ENST00000582792 CD164L2Q6UWJ8 174 aa8.49□□□□□ -1.05
SS18-222ENST00000582792 Q6ZN92 141 aa8.49□□□□□ -1.05
SS18-222ENST00000582792 IGKV2-24A0A0C4DH68 120 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 GAGE12HA6NDE8 117 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 HBDP02042 147 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 KRTAP10-8P60410 259 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 FOXI1Q12951 378 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 TEX43Q6ZNM6 134 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 SCGB3A1Q96QR1 104 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 OPRPNQ99935 248 aaPredicted RBP8.48□□□□□ -1.05
SS18-222ENST00000582792 VCX2Q9H322 139 aa8.48□□□□□ -1.05
SS18-222ENST00000582792 A0A096LNJ9 63 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 IFITM10A6NMD0 228 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 HIGD2BQ4VC39 106 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 RNASE13Q5GAN3 156 aaKnown RBP8.47□□□□□ -1.05
SS18-222ENST00000582792 FAM19A3Q7Z5A8 133 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 BAGE3Q86Y29 109 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 STPG4Q8N801 248 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 C2orf88Q9BSF0 95 aa8.47□□□□□ -1.05
SS18-222ENST00000582792 TRAV13-1A0A0B4J241 112 aa8.46□□□□□ -1.06
SS18-222ENST00000582792 PDZD11Q5EBL8 140 aa8.46□□□□□ -1.06
SS18-222ENST00000582792 REG3GQ6UW15 175 aa8.46□□□□□ -1.06
SS18-222ENST00000582792 SPINK6Q6UWN8 80 aa8.46□□□□□ -1.06
SS18-222ENST00000582792 ATP5LO75964 103 aa8.45□□□□□ -1.06
SS18-222ENST00000582792 XCL1P47992 114 aa8.45□□□□□ -1.06
SS18-222ENST00000582792 UBE2D1P51668 147 aa8.45□□□□□ -1.06
SS18-222ENST00000582792 LINC00173Q6ZV60 143 aa8.45□□□□□ -1.06
SS18-222ENST00000582792 A0A096LNI7 61 aa8.44□□□□□ -1.06
SS18-222ENST00000582792 GVQW2A0A096LPI5 108 aaPredicted RBP8.44□□□□□ -1.06
SS18-222ENST00000582792 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.44□□□□□ -1.06
SS18-222ENST00000582792 SEC11AP67812 179 aa8.44□□□□□ -1.06
SS18-222ENST00000582792 LINC01561Q8N1V8 128 aa8.44□□□□□ -1.06
SS18-222ENST00000582792 IGHV3OR16-9A0A0B4J2B5 98 aa8.43□□□□□ -1.06
SS18-222ENST00000582792 IGHV1-58A0A0C4DH39 117 aa8.43□□□□□ -1.06
SS18-222ENST00000582792 COX7A2LO14548 114 aa8.43□□□□□ -1.06
SS18-222ENST00000582792 HSBP1O75506 76 aa8.43□□□□□ -1.06
SS18-222ENST00000582792 LINC00242Q5T6M2 205 aa8.43□□□□□ -1.06
SS18-222ENST00000582792 LINC00474Q9P2X8 69 aa8.43□□□□□ -1.06
SS18-222ENST00000582792 HIST1H2BKO60814 126 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 SERF1AO75920 110 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 HIST1H2BJP06899 126 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 HIST1H2BOP23527 126 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 HIST1H2BBP33778 126 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 HIST1H2BDP58876 126 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 LINC00310P59036 64 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 HIST1H2BCP62807 126 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 SRSF9Q13242 221 aaKnown RBP eCLIP8.42□□□□□ -1.06
SS18-222ENST00000582792 PMVKQ15126 192 aa8.42□□□□□ -1.06
SS18-222ENST00000582792 HIST2H2BEQ16778 126 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 252.4 ms