RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 IGKCP01834 107 aa10.39□□□□□ -0.75
SS18-216ENST00000580751 HERVK_113P63121 156 aa10.39□□□□□ -0.75
SS18-216ENST00000580751 MIAQ16674 131 aa10.39□□□□□ -0.75
SS18-216ENST00000580751 LINC00269Q8N2A0 174 aa10.39□□□□□ -0.75
SS18-216ENST00000580751 TM2D2Q9BX73 214 aa10.39□□□□□ -0.75
SS18-216ENST00000580751 COX11Q9Y6N1 276 aa10.39□□□□□ -0.75
SS18-216ENST00000580751 TRAV8-4A0A0B4J246 113 aa10.38□□□□□ -0.75
SS18-216ENST00000580751 SS18Q15532 418 aa10.38□□□□□ -0.75
SS18-216ENST00000580751 IGLV4-69A0A075B6H9 119 aa10.37□□□□□ -0.75
SS18-216ENST00000580751 PSCAO43653 123 aa10.37□□□□□ -0.75
SS18-216ENST00000580751 REG3AQ06141 175 aa10.37□□□□□ -0.75
SS18-216ENST00000580751 ENHOQ6UWT2 76 aa10.37□□□□□ -0.75
SS18-216ENST00000580751 DNAH17Q9UFH2 4485 aa10.37□□□□□ -0.75
SS18-216ENST00000580751 IGLV5-45A0A087WSX0 123 aa10.36□□□□□ -0.75
SS18-216ENST00000580751 LINC00959A0A1B0GUT2 108 aa10.36□□□□□ -0.75
SS18-216ENST00000580751 RNASE13Q5GAN3 156 aaKnown RBP10.36□□□□□ -0.75
SS18-216ENST00000580751 CLPSL2Q6UWE3 100 aa10.36□□□□□ -0.75
SS18-216ENST00000580751 C1orf43Q9BWL3 253 aa10.36□□□□□ -0.75
SS18-216ENST00000580751 GEMIN7Q9H840 131 aaKnown RBP10.36□□□□□ -0.75
SS18-216ENST00000580751 FAT2Q9NYQ8 4349 aa10.36□□□□□ -0.75
SS18-216ENST00000580751 IGKV2D-24A0A075B6R9 120 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 TRAV13-1A0A0B4J241 112 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 HSBP1L1C9JCN9 74 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 TNP2Q05952 138 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 LINC00242Q5T6M2 205 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 ZC2HC1BQ5TFG8 222 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 CHAC1Q9BUX1 264 aa10.35□□□□□ -0.75
SS18-216ENST00000580751 A0A0J9YXV3 536 aa10.34□□□□□ -0.75
SS18-216ENST00000580751 C11orf86A6NJI1 115 aa10.34□□□□□ -0.75
SS18-216ENST00000580751 H3BRM9 83 aa10.34□□□□□ -0.75
SS18-216ENST00000580751 S100A12P80511 92 aa10.34□□□□□ -0.75
SS18-216ENST00000580751 LINC01561Q8N1V8 128 aa10.34□□□□□ -0.75
SS18-216ENST00000580751 PMCHL2Q9BQD1 86 aa10.34□□□□□ -0.75
SS18-216ENST00000580751 HERVK_113P61574 105 aa10.32□□□□□ -0.76
SS18-216ENST00000580751 CD164L2Q6UWJ8 174 aa10.32□□□□□ -0.76
SS18-216ENST00000580751 LINC00518Q8N0U6 118 aa10.32□□□□□ -0.76
SS18-216ENST00000580751 VAMP8Q9BV40 100 aa10.32□□□□□ -0.76
SS18-216ENST00000580751 IGHV3OR16-9A0A0B4J2B5 98 aa10.31□□□□□ -0.76
SS18-216ENST00000580751 IGKV3OR2-268A0A0C4DH90 116 aa10.31□□□□□ -0.76
SS18-216ENST00000580751 EREGO14944 169 aa10.31□□□□□ -0.76
SS18-216ENST00000580751 ZNF22P17026 224 aaPredicted RBP10.31□□□□□ -0.76
SS18-216ENST00000580751 IGLV10-54A0A075B6I4 117 aa10.3□□□□□ -0.76
SS18-216ENST00000580751 TMEM170BQ5T4T1 132 aa10.3□□□□□ -0.76
SS18-216ENST00000580751 C12orf57Q99622 126 aa10.3□□□□□ -0.76
SS18-216ENST00000580751 HECTD4Q9Y4D8 3996 aa10.3□□□□□ -0.76
SS18-216ENST00000580751 A0A087WTM6 91 aa10.29□□□□□ -0.76
SS18-216ENST00000580751 ATOH7Q8N100 152 aa10.29□□□□□ -0.76
SS18-216ENST00000580751 LINC00469Q8N7U9 141 aa10.29□□□□□ -0.76
SS18-216ENST00000580751 CHCHD10Q8WYQ3 142 aaPredicted RBP10.29□□□□□ -0.76
SS18-216ENST00000580751 A0A087WZ39 114 aa10.28□□□□□ -0.76
SS18-216ENST00000580751 A0A1B0GVY2 172 aa10.28□□□□□ -0.76
SS18-216ENST00000580751 TMEM223A0PJW6 202 aa10.28□□□□□ -0.76
SS18-216ENST00000580751 E9PLD3 99 aa10.28□□□□□ -0.76
SS18-216ENST00000580751 COX6A2Q02221 97 aa10.28□□□□□ -0.76
SS18-216ENST00000580751 CDKN2A-AS1Q9UH64 79 aa10.28□□□□□ -0.76
SS18-216ENST00000580751 LRCOL1A6NCL2 159 aa10.27□□□□□ -0.77
SS18-216ENST00000580751 MAPKAPK5-AS1Q8N8E1 139 aa10.27□□□□□ -0.77
SS18-216ENST00000580751 COX7A2LO14548 114 aa10.26□□□□□ -0.77
SS18-216ENST00000580751 XCL1P47992 114 aa10.26□□□□□ -0.77
SS18-216ENST00000580751 KRTAP26-1Q6PEX3 210 aa10.26□□□□□ -0.77
SS18-216ENST00000580751 STPG4Q8N801 248 aa10.26□□□□□ -0.77
SS18-216ENST00000580751 PKD1P98161 4303 aa10.26□□□□□ -0.77
SS18-216ENST00000580751 IGHV1-58A0A0C4DH39 117 aa10.25□□□□□ -0.77
SS18-216ENST00000580751 IGLV5-39A0A0G2JS06 123 aa10.25□□□□□ -0.77
SS18-216ENST00000580751 hDV102S1A0JD36 115 aa10.25□□□□□ -0.77
SS18-216ENST00000580751 FOXI1Q12951 378 aa10.25□□□□□ -0.77
SS18-216ENST00000580751 SPATA45Q537H7 98 aa10.25□□□□□ -0.77
SS18-216ENST00000580751 PLEKHB2Q96CS7 222 aa10.25□□□□□ -0.77
SS18-216ENST00000580751 GAGE12HA6NDE8 117 aa10.24□□□□□ -0.77
SS18-216ENST00000580751 APOMO95445 188 aa10.24□□□□□ -0.77
SS18-216ENST00000580751 CDPF1Q6NVV7 123 aa10.24□□□□□ -0.77
SS18-216ENST00000580751 PAM16Q9Y3D7 125 aa10.24□□□□□ -0.77
SS18-216ENST00000580751 EPPK1P58107 5090 aaKnown RBP10.24□□□□□ -0.77
SS18-216ENST00000580751 SMIM1B2RUZ4 78 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 LECT2O14960 151 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 LEPROTO15243 131 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 C14orf177Q52M58 125 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 SFTA2Q6UW10 78 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 Q8N814 137 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 DNAH11Q96DT5 4516 aa10.23□□□□□ -0.77
SS18-216ENST00000580751 WFDC2Q14508 124 aa10.22□□□□□ -0.77
SS18-216ENST00000580751 MAJINQ3KP22 176 aa10.22□□□□□ -0.77
SS18-216ENST00000580751 ANKRD39Q53RE8 183 aa10.22□□□□□ -0.77
SS18-216ENST00000580751 USP17L23D6RBM5 183 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 DLEU1O43261 78 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 MALP21145 153 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 NMUP48645 174 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 CFAP161Q6P656 301 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 C5orf38Q86SI9 138 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 NTN5Q8WTR8 489 aaPredicted RBP10.21□□□□□ -0.77
SS18-216ENST00000580751 PGPEP1Q9NXJ5 209 aa10.21□□□□□ -0.77
SS18-216ENST00000580751 PKHD1P08F94 4074 aa10.21□□□□□ -0.78
SS18-216ENST00000580751 IGHV3-64A0A075B6Q5 118 aa10.2□□□□□ -0.78
SS18-216ENST00000580751 J3QQQ9 107 aa10.2□□□□□ -0.78
SS18-216ENST00000580751 SPINK8P0C7L1 97 aa10.2□□□□□ -0.78
SS18-216ENST00000580751 COX8AP10176 69 aa10.2□□□□□ -0.78
SS18-216ENST00000580751 LGALS3P17931 250 aaKnown RBP10.19□□□□□ -0.78
SS18-216ENST00000580751 KRTAP10-2P60368 255 aa10.19□□□□□ -0.78
SS18-216ENST00000580751 IGKV2D-26A0A0A0MRZ7 120 aa10.18□□□□□ -0.78
SS18-216ENST00000580751 F8WDY8 70 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 200.4 ms