RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 C11orf86A6NJI1 115 aa7.03□□□□□ -1.28
SS18-210ENST00000578700 C16orf90A8MZG2 172 aa7.03□□□□□ -1.28
SS18-210ENST00000578700 LCE2AQ5TA79 106 aaPredicted RBP7.03□□□□□ -1.28
SS18-210ENST00000578700 NFE4Q86UQ8 179 aa7.03□□□□□ -1.28
SS18-210ENST00000578700 MAPKAPK5-AS1Q8N8E1 139 aa7.03□□□□□ -1.28
SS18-210ENST00000578700 AMELXQ99217 191 aa7.03□□□□□ -1.28
SS18-210ENST00000578700 GEMIN7Q9H840 131 aaKnown RBP7.03□□□□□ -1.28
SS18-210ENST00000578700 MRPS16Q9Y3D3 137 aaKnown RBP7.03□□□□□ -1.28
SS18-210ENST00000578700 DNAH5Q8TE73 4624 aa7.02□□□□□ -1.28
SS18-210ENST00000578700 IGLV4-69A0A075B6H9 119 aa7.02□□□□□ -1.29
SS18-210ENST00000578700 H3BRM9 83 aa7.02□□□□□ -1.29
SS18-210ENST00000578700 M0R143 59 aa7.02□□□□□ -1.29
SS18-210ENST00000578700 DLEU1O43261 78 aa7.02□□□□□ -1.29
SS18-210ENST00000578700 C1orf134Q5TEV5 83 aa7.02□□□□□ -1.29
SS18-210ENST00000578700 Q6ZUT4 128 aa7.02□□□□□ -1.29
SS18-210ENST00000578700 TINCRA0A1B0GVN0 87 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 TMEM262E9PQX1 116 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 H3BNG1 76 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 SIVA1O15304 175 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 CTAG1AP78358 180 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 GAGE6Q13070 117 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 BOD1L2Q8IYS8 172 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 VSIG2Q96IQ7 327 aa7.01□□□□□ -1.29
SS18-210ENST00000578700 NACAE9PAV3 2078 aa7□□□□□ -1.29
SS18-210ENST00000578700 A0A096LPF7 62 aa7□□□□□ -1.29
SS18-210ENST00000578700 TRAV8-6A0A0B4J262 113 aa7□□□□□ -1.29
SS18-210ENST00000578700 A0A0J9YXV3 536 aa7□□□□□ -1.29
SS18-210ENST00000578700 E9PLD3 99 aa7□□□□□ -1.29
SS18-210ENST00000578700 HERVK_113P63121 156 aa7□□□□□ -1.29
SS18-210ENST00000578700 LBHQ53QV2 105 aaPredicted RBP7□□□□□ -1.29
SS18-210ENST00000578700 RNASE13Q5GAN3 156 aaKnown RBP7□□□□□ -1.29
SS18-210ENST00000578700 Q6ZR54 194 aa7□□□□□ -1.29
SS18-210ENST00000578700 CDC42SE2Q9NRR3 84 aa7□□□□□ -1.29
SS18-210ENST00000578700 LGALS3P17931 250 aaKnown RBP6.99□□□□□ -1.29
SS18-210ENST00000578700 TNP2Q05952 138 aa6.99□□□□□ -1.29
SS18-210ENST00000578700 LINC00469Q8N7U9 141 aa6.99□□□□□ -1.29
SS18-210ENST00000578700 PLEKHB2Q96CS7 222 aa6.99□□□□□ -1.29
SS18-210ENST00000578700 UBE2D1P51668 147 aa6.98□□□□□ -1.29
SS18-210ENST00000578700 TIRAPP58753 221 aa6.98□□□□□ -1.29
SS18-210ENST00000578700 LELP1Q5T871 98 aa6.98□□□□□ -1.29
SS18-210ENST00000578700 PCP2Q8IVA1 136 aa6.98□□□□□ -1.29
SS18-210ENST00000578700 IGKV2D-26A0A0A0MRZ7 120 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 TRAV13-1A0A0B4J241 112 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 MYMXA0A1B0GTQ4 84 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 A0A1B0GUV1 79 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 TMEM223A0PJW6 202 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 LEPROTO15243 131 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 ZNF22P17026 224 aaPredicted RBP6.97□□□□□ -1.29
SS18-210ENST00000578700 BATFQ16520 125 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 SCGB1D4Q6XE38 83 aa6.97□□□□□ -1.29
SS18-210ENST00000578700 ZNF815PA8K554 130 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 J3QQQ9 107 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 CCL25O15444 150 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 CDK2AP2O75956 126 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 SS18Q15532 418 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 FAM19A3Q7Z5A8 133 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 FAM104AQ969W3 186 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 HIGD1BQ9P298 99 aa6.96□□□□□ -1.3
SS18-210ENST00000578700 RBX1P62877 108 aa6.95□□□□□ -1.3
SS18-210ENST00000578700 HSD52Q0P140 79 aa6.95□□□□□ -1.3
SS18-210ENST00000578700 DMBT1Q9UGM3 2413 aaPredicted RBP6.95□□□□□ -1.3
SS18-210ENST00000578700 IGHV1-58A0A0C4DH39 117 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 IGKV3OR2-268A0A0C4DH90 116 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 HINT1P49773 126 aaPredicted RBP6.94□□□□□ -1.3
SS18-210ENST00000578700 COL5A1-AS1Q5SY13 56 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 LINC00242Q5T6M2 205 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 C2orf91Q6ZV80 131 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 Q8N1X5 172 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 C15orf53Q8NAA6 179 aa6.94□□□□□ -1.3
SS18-210ENST00000578700 IGLV4-60A0A075B6I1 120 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 IGHV3-64A0A075B6Q5 118 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 IGLV5-45A0A087WSX0 123 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 ANGP03950 147 aaKnown RBP6.93□□□□□ -1.3
SS18-210ENST00000578700 SPINK8P0C7L1 97 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 TAL2Q16559 108 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 MPV17L2Q567V2 206 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 LYPD5Q6UWN5 251 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 C6orf223Q8N319 242 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 CDKN2A-AS1Q9UH64 79 aa6.93□□□□□ -1.3
SS18-210ENST00000578700 A6NDN8 102 aa6.92□□□□□ -1.3
SS18-210ENST00000578700 EREGO14944 169 aa6.92□□□□□ -1.3
SS18-210ENST00000578700 IGHV3-30-3P0DP02 117 aa6.92□□□□□ -1.3
SS18-210ENST00000578700 HIST1H4GQ99525 98 aa6.92□□□□□ -1.3
SS18-210ENST00000578700 TTTY13Q9BZ97 58 aa6.92□□□□□ -1.3
SS18-210ENST00000578700 TP73-AS1Q9UF72 201 aa6.92□□□□□ -1.3
SS18-210ENST00000578700 FAT1Q14517 4588 aa6.91□□□□□ -1.3
SS18-210ENST00000578700 NBDYA0A0U1RRE5 68 aa6.91□□□□□ -1.3
SS18-210ENST00000578700 LINC00959A0A1B0GUT2 108 aa6.91□□□□□ -1.3
SS18-210ENST00000578700 CRPP02741 224 aa6.91□□□□□ -1.3
SS18-210ENST00000578700 SRSF9Q13242 221 aaKnown RBP eCLIP6.91□□□□□ -1.3
SS18-210ENST00000578700 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
SS18-210ENST00000578700 VPS13BQ7Z7G8 4022 aa6.91□□□□□ -1.3
SS18-210ENST00000578700 SRRM2Q9UQ35 2752 aaKnown RBP6.91□□□□□ -1.3
SS18-210ENST00000578700 TMEM238C9JI98 176 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 GCSHP23434 173 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 PTTG1IPP53801 180 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 COX6A2Q02221 97 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 REG3AQ06141 175 aa6.9□□□□□ -1.3
SS18-210ENST00000578700 BVES-AS1Q5T3Y7 98 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms