RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 Q8TAT8 98 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 TVP23CQ96ET8 276 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 TXNDC17Q9BRA2 123 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 SLC50A1Q9BRV3 221 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 SMDT1Q9H4I9 107 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 SORL1Q92673 2214 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 KRTAP16-1A8MUX0 517 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 EPM2AB3EWF7 344 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 INSL3P51460 131 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 MPV17L2Q567V2 206 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 DEFB121Q5J5C9 76 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 CMTM2Q8TAZ6 248 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 GTSF1Q8WW33 167 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 SMIM7Q9BQ49 75 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 WFDC10AQ9H1F0 79 aa4.77□□□□□ -1.65
VPS53-217ENST00000575100 CD7P09564 240 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 CRYGAP11844 174 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 Q6ZQT7 251 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 SLC25A29Q8N8R3 303 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 AGPAT4-IT1Q9H0P7 198 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 TRAV13-1A0A0B4J241 112 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 MUC21A0A140T8X8 626 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 A0A1W2PPM0 123 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 GRIFINA4D1Z8 144 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 C3orf84H3BNL1 204 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 SERF1AO75920 110 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 SNCGO76070 127 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 FABP2P12104 132 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 DEFB131AP59861 70 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 LINC00322Q6ZN03 302 aaPredicted RBP4.76□□□□□ -1.65
VPS53-217ENST00000575100 Q86TA4 180 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 TMEM242Q9NWH2 141 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 U3KQK5 164 aa4.76□□□□□ -1.65
VPS53-217ENST00000575100 RYR2Q92736 4967 aa4.75□□□□□ -1.65
VPS53-217ENST00000575100 A8MWV9 139 aa4.75□□□□□ -1.65
VPS53-217ENST00000575100 IGKV3-20P01619 116 aa4.75□□□□□ -1.65
VPS53-217ENST00000575100 KTN1-AS1Q86SY8 53 aa4.75□□□□□ -1.65
VPS53-217ENST00000575100 OR8A1Q8NGG7 326 aa4.75□□□□□ -1.65
VPS53-217ENST00000575100 SDF2L1Q9HCN8 221 aa4.75□□□□□ -1.65
VPS53-217ENST00000575100 A0A0J9YX75 114 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 INAFM2P0DMQ5 153 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 CSN1S1P47710 185 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 CRIP1P50238 77 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 ZNF80P51504 273 aaPredicted RBP4.74□□□□□ -1.65
VPS53-217ENST00000575100 UBE2G1P62253 170 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 SNRPD3P62318 126 aaKnown RBP4.74□□□□□ -1.65
VPS53-217ENST00000575100 ZNF876PQ49A33 203 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 PRR9Q5T870 116 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 C9orf47Q6ZRZ4 202 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 PRELID3AQ96N28 172 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 AGRNO00468 2067 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 TRAV2A0A0B4J234 112 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 C9JCJ5 164 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 TRACP01848 142 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 ASIPP42127 132 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 GTSCR1Q86UQ5 136 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 BAGE2Q86Y30 109 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 BIRC6Q9NR09 4857 aa4.74□□□□□ -1.65
VPS53-217ENST00000575100 TRBV7-6A0A0J9YX20 115 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 RBAKDNA6NC62 111 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 MGST1P10620 155 aaKnown RBP4.73□□□□□ -1.65
VPS53-217ENST00000575100 CRISP2P16562 243 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 PMCHL1Q16048 86 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 PCP2Q8IVA1 136 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 RAB37Q96AX2 223 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 TOMM6Q96B49 74 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 CAMK2N2Q96S95 79 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 IGLV7-46A0A075B6I9 117 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 TRAV9-1A0A075B6T8 112 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 TRBV6-1A0A0K0K1D8 114 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 A0A1B0GUV1 79 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 H3BMM0 161 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 H3BUT2 72 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 FXYD7P58549 80 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 ETDBQ3ZM63 59 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 ZFAND2AQ8N6M9 145 aa4.73□□□□□ -1.65
VPS53-217ENST00000575100 KLK5Q9Y337 293 aaPredicted RBP4.73□□□□□ -1.65
VPS53-217ENST00000575100 SACSQ9NZJ4 4579 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 TRAV12-2A0A075B6T6 113 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 HLA-DRB4P13762 266 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 WFDC2Q14508 124 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 SPINK13Q1W4C9 94 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 CAMK2N1Q7Z7J9 78 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 Q8N976 141 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 HLA-DRB4X5D2U9 266 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 DNAH1Q9P2D7 4330 aa4.72□□□□□ -1.65
VPS53-217ENST00000575100 HUWE1Q7Z6Z7 4374 aaKnown RBP4.72□□□□□ -1.65
VPS53-217ENST00000575100 STAB2Q8WWQ8 2551 aa4.71□□□□□ -1.65
VPS53-217ENST00000575100 C19orf71A6NCJ1 209 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 IGLL5B9A064 214 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 ZC2HC1BQ5TFG8 222 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 PYGO2Q9BRQ0 406 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 TP73-AS1Q9UF72 201 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 LY96Q9Y6Y9 160 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 DNAH7Q8WXX0 4024 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 A8MTW9 85 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 PRM2P04554 102 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 GIG44P09565 113 aaPredicted RBP4.71□□□□□ -1.66
VPS53-217ENST00000575100 MUC7Q8TAX7 377 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 C18orf32Q8TCD1 76 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms