RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TRGC2P03986 189 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 INAFM2P0DMQ5 153 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 DEFB130BP0DP73 79 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 DEFB130AP0DP74 79 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HTN3P15516 51 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BOP23527 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BBP33778 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BDP58876 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BCP62807 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST2H2BEQ16778 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.05□□□□□ -1.76
VPS53-212ENST00000572259 ZNF767PQ75MW2 155 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 C15orf53Q8NAA6 179 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 C5orf17Q8NAS9 161 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BHQ93079 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 LYSTQ99698 3801 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BNQ99877 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BMQ99879 126 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 LINC00467Q9BRT7 94 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 NOP10Q9NPE3 64 aaKnown RBP4.05□□□□□ -1.76
VPS53-212ENST00000572259 DYNC2H1Q8NCM8 4307 aaKnown RBP4.05□□□□□ -1.76
VPS53-212ENST00000572259 SACSQ9NZJ4 4579 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 TAX1BP3O14907 124 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 ZNF73O43830 326 aaPredicted RBP4.04□□□□□ -1.76
VPS53-212ENST00000572259 ZNF324O75467 553 aaPredicted RBP4.04□□□□□ -1.76
VPS53-212ENST00000572259 PRB4P10163 310 aaPredicted RBP4.04□□□□□ -1.76
VPS53-212ENST00000572259 TPT1P13693 172 aaKnown RBP4.04□□□□□ -1.76
VPS53-212ENST00000572259 AZU1P20160 251 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 NTF3P20783 257 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 KRTAP5-9P26371 169 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 ZNF80P51504 273 aaPredicted RBP4.04□□□□□ -1.76
VPS53-212ENST00000572259 LGALSLQ3ZCW2 172 aaPredicted RBP4.04□□□□□ -1.76
VPS53-212ENST00000572259 LUZP6Q538Z0 58 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 Q5XG85 94 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 FAM104BQ5XKR9 115 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 AMMECR1LQ6DCA0 310 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 DPPA3Q6W0C5 159 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 PCP2Q8IVA1 136 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 POM121L12Q8N7R1 296 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 C15orf56Q8N910 161 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 AP1S3Q96PC3 154 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 NIT2Q9NQR4 276 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 APLNQ9ULZ1 77 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 EPDR1Q9UM22 224 aa4.04□□□□□ -1.76
VPS53-212ENST00000572259 TRGV2A0A075B6R0 118 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 TRAV21A0A0B4J279 112 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 G3V3Q6 166 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 PRM2P04554 102 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 RAB5CP51148 216 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 NDUFA6P56556 154 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 LGALS9BQ3B8N2 356 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 Q6AWC8 147 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 UBE2DNLQ8IWF7 75 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 CEND1Q8N111 149 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 ZFAND2AQ8N6M9 145 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 CYB561D1Q8N8Q1 229 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 HIST1H2BAQ96A08 127 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 CYTL1Q9NRR1 136 aa4.03□□□□□ -1.76
VPS53-212ENST00000572259 DNAH1Q9P2D7 4330 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 TRGV1A0A0A0MS02 117 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 K7ERS5 55 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 HLA-DQA1P01909 254 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 TCRAP04437 139 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 LINC01551Q86U37 167 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 C10orf126Q8N4M7 172 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 Q8TAT8 98 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 FAM213BQ8TBF2 198 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 SFT2D1Q8WV19 159 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 ARL2-SNX15V9GYD0 113 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 ALMS1Q8TCU4 4167 aa4.02□□□□□ -1.77
VPS53-212ENST00000572259 M0R378 163 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 TLX1NBP0CAT3 122 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 AKR1D1P51857 326 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 CCL18P55774 89 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 UBE2G1P62253 170 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 TDRG1Q3Y452 100 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 DAND5Q8N907 189 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 TP73-AS1Q9UF72 201 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 ZFP30Q9Y2G7 519 aa4.01□□□□□ -1.77
VPS53-212ENST00000572259 TRBV7-6A0A0J9YX20 115 aa4□□□□□ -1.77
VPS53-212ENST00000572259 TMEM223A0PJW6 202 aa4□□□□□ -1.77
VPS53-212ENST00000572259 GGTLC3B5MD39 225 aa4□□□□□ -1.77
VPS53-212ENST00000572259 H3BNG1 76 aa4□□□□□ -1.77
VPS53-212ENST00000572259 M0R2P5 195 aa4□□□□□ -1.77
VPS53-212ENST00000572259 SPINK4O60575 86 aa4□□□□□ -1.77
VPS53-212ENST00000572259 NCR2O95944 276 aa4□□□□□ -1.77
VPS53-212ENST00000572259 LGALS3P17931 250 aaKnown RBP4□□□□□ -1.77
VPS53-212ENST00000572259 S100A4P26447 101 aaKnown RBP4□□□□□ -1.77
VPS53-212ENST00000572259 RPL35P42766 123 aaKnown RBP4□□□□□ -1.77
VPS53-212ENST00000572259 HIGD2BQ4VC39 106 aa4□□□□□ -1.77
VPS53-212ENST00000572259 KRTAP5-1Q6L8H4 278 aa4□□□□□ -1.77
VPS53-212ENST00000572259 NTM-AS1Q6ZSK4 140 aa4□□□□□ -1.77
VPS53-212ENST00000572259 Q6ZTI0 123 aa4□□□□□ -1.77
VPS53-212ENST00000572259 AMN1Q8IY45 258 aa4□□□□□ -1.77
VPS53-212ENST00000572259 LINC00612Q8N6U2 182 aa4□□□□□ -1.77
VPS53-212ENST00000572259 Q8N976 141 aa4□□□□□ -1.77
VPS53-212ENST00000572259 TXNDC17Q9BRA2 123 aa4□□□□□ -1.77
VPS53-212ENST00000572259 DERL1Q9BUN8 251 aa4□□□□□ -1.77
VPS53-212ENST00000572259 MANBALQ9NQG1 85 aa4□□□□□ -1.77
VPS53-212ENST00000572259 IL36BQ9NZH7 164 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms