RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 Q6ZQY7 126 aa11.05□□□□□ -0.64
CIITA-204ENST00000570546 KIF25-AS1Q9Y6Z4 181 aa11.05□□□□□ -0.64
CIITA-204ENST00000570546 HIVEP2P31629 2446 aa11.05□□□□□ -0.64
CIITA-204ENST00000570546 LY6G6DO95868 133 aa11.05□□□□□ -0.64
CIITA-204ENST00000570546 FAM236DA0A1B0GTK5 79 aa11.05□□□□□ -0.64
CIITA-204ENST00000570546 FAM236CP0DP71 79 aa11.05□□□□□ -0.64
CIITA-204ENST00000570546 USP17L23D6RBM5 183 aa11.04□□□□□ -0.64
CIITA-204ENST00000570546 SYCNQ0VAF6 134 aa11.04□□□□□ -0.64
CIITA-204ENST00000570546 SERP2Q8N6R1 65 aa11.04□□□□□ -0.64
CIITA-204ENST00000570546 CLUHP3Q96NS8 147 aa11.04□□□□□ -0.64
CIITA-204ENST00000570546 BEAN1Q3B7T3 259 aa11.04□□□□□ -0.64
CIITA-204ENST00000570546 KIR2DL5BQ8NHK3 375 aa11.04□□□□□ -0.64
CIITA-204ENST00000570546 KRTAP10-9P60411 292 aa11.03□□□□□ -0.64
CIITA-204ENST00000570546 C5orf47Q569G3 176 aa11.03□□□□□ -0.64
CIITA-204ENST00000570546 HIGD2AQ9BW72 106 aa11.03□□□□□ -0.64
CIITA-204ENST00000570546 CSDC2Q9Y534 153 aaKnown RBP11.03□□□□□ -0.64
CIITA-204ENST00000570546 RPL28P46779 137 aaKnown RBP11.02□□□□□ -0.64
CIITA-204ENST00000570546 B9D2Q9BPU9 175 aa11.02□□□□□ -0.64
CIITA-204ENST00000570546 M0R378 163 aa11.02□□□□□ -0.65
CIITA-204ENST00000570546 CCKP06307 115 aa11.02□□□□□ -0.65
CIITA-204ENST00000570546 IGLV4-60A0A075B6I1 120 aa11.02□□□□□ -0.65
CIITA-204ENST00000570546 NDUFC2O95298 119 aa11.02□□□□□ -0.65
CIITA-204ENST00000570546 Q6JHZ5 121 aa11.01□□□□□ -0.65
CIITA-204ENST00000570546 WNK1Q9H4A3 2382 aa11.01□□□□□ -0.65
CIITA-204ENST00000570546 COX7CP15954 63 aa11.01□□□□□ -0.65
CIITA-204ENST00000570546 A0A087WZ39 114 aa11.01□□□□□ -0.65
CIITA-204ENST00000570546 H0Y9J4 135 aa11.01□□□□□ -0.65
CIITA-204ENST00000570546 C14orf177Q52M58 125 aa11.01□□□□□ -0.65
CIITA-204ENST00000570546 FAM19A5Q7Z5A7 132 aaPredicted RBP11.01□□□□□ -0.65
CIITA-204ENST00000570546 KPRPQ5T749 579 aaPredicted RBP11□□□□□ -0.65
CIITA-204ENST00000570546 FAM19A1Q7Z5A9 133 aa11□□□□□ -0.65
CIITA-204ENST00000570546 CENPFP49454 3210 aa11□□□□□ -0.65
CIITA-204ENST00000570546 KLK5Q9Y337 293 aaPredicted RBP11□□□□□ -0.65
CIITA-204ENST00000570546 IGLV1-51P01701 117 aa10.99□□□□□ -0.65
CIITA-204ENST00000570546 IGKV2-28A0A075B6P5 120 aa10.99□□□□□ -0.65
CIITA-204ENST00000570546 IGKV2D-28P01615 120 aa10.99□□□□□ -0.65
CIITA-204ENST00000570546 A0A087WYN8 130 aa10.99□□□□□ -0.65
CIITA-204ENST00000570546 FHL2Q14192 279 aa10.99□□□□□ -0.65
CIITA-204ENST00000570546 FAM19A4Q96LR4 140 aa10.99□□□□□ -0.65
CIITA-204ENST00000570546 CYSRT1A8MQ03 144 aa10.98□□□□□ -0.65
CIITA-204ENST00000570546 ZNF73O43830 326 aaPredicted RBP10.98□□□□□ -0.65
CIITA-204ENST00000570546 MUC7Q8TAX7 377 aa10.98□□□□□ -0.65
CIITA-204ENST00000570546 C3orf84H3BNL1 204 aa10.98□□□□□ -0.65
CIITA-204ENST00000570546 LINC00315P59091 139 aa10.97□□□□□ -0.65
CIITA-204ENST00000570546 M0QXV9 152 aa10.96□□□□□ -0.66
CIITA-204ENST00000570546 IGF2RP11717 2491 aa10.96□□□□□ -0.66
CIITA-204ENST00000570546 UNQ6190/PRO20217Q6UXQ8 127 aa10.96□□□□□ -0.66
CIITA-204ENST00000570546 Q8N814 137 aa10.96□□□□□ -0.66
CIITA-204ENST00000570546 C9orf116Q5BN46 136 aaPredicted RBP10.95□□□□□ -0.66
CIITA-204ENST00000570546 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.95□□□□□ -0.66
CIITA-204ENST00000570546 PCSK5Q92824 1860 aa10.95□□□□□ -0.66
CIITA-204ENST00000570546 CHKB-CPT1BH3BT56 60 aa10.94□□□□□ -0.66
CIITA-204ENST00000570546 DHRS4-AS1Q9P1J3 65 aa10.94□□□□□ -0.66
CIITA-204ENST00000570546 PRR3P79522 188 aaKnown RBP10.94□□□□□ -0.66
CIITA-204ENST00000570546 SORL1Q92673 2214 aa10.94□□□□□ -0.66
CIITA-204ENST00000570546 TRAV10A0A0B4J240 114 aa10.94□□□□□ -0.66
CIITA-204ENST00000570546 DNAH12Q6ZR08 3092 aa10.93□□□□□ -0.66
CIITA-204ENST00000570546 SNURFQ9Y675 71 aa10.93□□□□□ -0.66
CIITA-204ENST00000570546 SHISA2Q6UWI4 295 aa10.93□□□□□ -0.66
CIITA-204ENST00000570546 BRK1Q8WUW1 75 aa10.93□□□□□ -0.66
CIITA-204ENST00000570546 A0A096LNI7 61 aa10.92□□□□□ -0.66
CIITA-204ENST00000570546 NTM-AS1Q6ZSK4 140 aa10.92□□□□□ -0.66
CIITA-204ENST00000570546 CDIP1Q9H305 208 aa10.92□□□□□ -0.66
CIITA-204ENST00000570546 C16orf95Q9H693 158 aa10.92□□□□□ -0.66
CIITA-204ENST00000570546 CACNA1AO00555 2505 aa10.92□□□□□ -0.66
CIITA-204ENST00000570546 IGHV4-30-4P0DP06 118 aa10.91□□□□□ -0.66
CIITA-204ENST00000570546 C11orf72Q8NBR9 251 aa10.91□□□□□ -0.66
CIITA-204ENST00000570546 NAV2Q8IVL1 2488 aa10.91□□□□□ -0.66
CIITA-204ENST00000570546 MPLKIPQ8TAP9 179 aa10.91□□□□□ -0.66
CIITA-204ENST00000570546 RPL37AP8A6NKH3 93 aa10.9□□□□□ -0.66
CIITA-204ENST00000570546 SMR3AQ99954 134 aa10.9□□□□□ -0.66
CIITA-204ENST00000570546 PTPRBP23467 1997 aa10.9□□□□□ -0.67
CIITA-204ENST00000570546 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.89□□□□□ -0.67
CIITA-204ENST00000570546 NDUFC1O43677 76 aa10.89□□□□□ -0.67
CIITA-204ENST00000570546 PTPN13Q12923 2485 aa10.89□□□□□ -0.67
CIITA-204ENST00000570546 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.89□□□□□ -0.67
CIITA-204ENST00000570546 TRBV10-3A0A0K0K1G6 114 aa10.89□□□□□ -0.67
CIITA-204ENST00000570546 NDUFC2-KCTD14E9PQ53 114 aa10.89□□□□□ -0.67
CIITA-204ENST00000570546 TLN1Q9Y490 2541 aaKnown RBP10.89□□□□□ -0.67
CIITA-204ENST00000570546 A0A087WVE0 104 aa10.88□□□□□ -0.67
CIITA-204ENST00000570546 WFDC10BQ8IUB3 73 aa10.88□□□□□ -0.67
CIITA-204ENST00000570546 NANOS2P60321 138 aaKnown RBP10.87□□□□□ -0.67
CIITA-204ENST00000570546 SMCPP49901 116 aaPredicted RBP10.87□□□□□ -0.67
CIITA-204ENST00000570546 IGLV5-39A0A0G2JS06 123 aa10.87□□□□□ -0.67
CIITA-204ENST00000570546 A0A1B0GUV1 79 aa10.87□□□□□ -0.67
CIITA-204ENST00000570546 ATP5EP56381 51 aaPredicted RBP10.87□□□□□ -0.67
CIITA-204ENST00000570546 PLA2G2AP14555 144 aa10.87□□□□□ -0.67
CIITA-204ENST00000570546 EGFEM1PQ0D2K5 195 aa10.87□□□□□ -0.67
CIITA-204ENST00000570546 FAM19A3Q7Z5A8 133 aa10.86□□□□□ -0.67
CIITA-204ENST00000570546 A0A0J9YWU9 116 aa10.86□□□□□ -0.67
CIITA-204ENST00000570546 LOC107984640A0A0U1RRK4 108 aa10.86□□□□□ -0.67
CIITA-204ENST00000570546 SONP18583 2426 aaKnown RBP10.85□□□□□ -0.67
CIITA-204ENST00000570546 IGKV4-1P06312 121 aa10.85□□□□□ -0.67
CIITA-204ENST00000570546 PRO0461Q9UI25 63 aa10.85□□□□□ -0.67
CIITA-204ENST00000570546 LINC00337Q8N6G1 96 aa10.85□□□□□ -0.67
CIITA-204ENST00000570546 COL27A1Q8IZC6 1860 aaPredicted RBP10.85□□□□□ -0.67
CIITA-204ENST00000570546 NCOR2Q9Y618 2525 aa10.85□□□□□ -0.67
CIITA-204ENST00000570546 OXLD1Q5BKU9 147 aa10.84□□□□□ -0.67
CIITA-204ENST00000570546 Q8N2B8 174 aa10.84□□□□□ -0.67
CIITA-204ENST00000570546 C6orf223Q8N319 242 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms