RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CCL25O15444 150 aa9□□□□□ -0.97
CLK3-218ENST00000566926 Q6ZUT4 128 aa9□□□□□ -0.97
CLK3-218ENST00000566926 MRPL35Q9NZE8 188 aaKnown RBP9□□□□□ -0.97
CLK3-218ENST00000566926 COX11Q9Y6N1 276 aa9□□□□□ -0.97
CLK3-218ENST00000566926 A0A087WTM6 91 aa8.99□□□□□ -0.97
CLK3-218ENST00000566926 IGLC3P0DOY3 106 aa8.99□□□□□ -0.97
CLK3-218ENST00000566926 RBX1P62877 108 aa8.99□□□□□ -0.97
CLK3-218ENST00000566926 CDPF1Q6NVV7 123 aa8.99□□□□□ -0.97
CLK3-218ENST00000566926 RMI2Q96E14 147 aa8.99□□□□□ -0.97
CLK3-218ENST00000566926 FAM19A3Q7Z5A8 133 aa8.98□□□□□ -0.97
CLK3-218ENST00000566926 FAM104AQ969W3 186 aa8.98□□□□□ -0.97
CLK3-218ENST00000566926 OPRPNQ99935 248 aaPredicted RBP8.98□□□□□ -0.97
CLK3-218ENST00000566926 TINCRA0A1B0GVN0 87 aa8.97□□□□□ -0.97
CLK3-218ENST00000566926 UBE2D1P51668 147 aa8.97□□□□□ -0.97
CLK3-218ENST00000566926 KRTAP10-2P60368 255 aa8.97□□□□□ -0.97
CLK3-218ENST00000566926 HERVK_113P63121 156 aa8.97□□□□□ -0.97
CLK3-218ENST00000566926 MPV17L2Q567V2 206 aa8.97□□□□□ -0.97
CLK3-218ENST00000566926 PMCHL2Q9BQD1 86 aa8.97□□□□□ -0.97
CLK3-218ENST00000566926 DNAH11Q96DT5 4516 aa8.96□□□□□ -0.97
CLK3-218ENST00000566926 IGLV4-69A0A075B6H9 119 aa8.96□□□□□ -0.98
CLK3-218ENST00000566926 HERVK_113P61574 105 aa8.96□□□□□ -0.98
CLK3-218ENST00000566926 Q8N3U1 123 aa8.96□□□□□ -0.98
CLK3-218ENST00000566926 CHAC1Q9BUX1 264 aa8.96□□□□□ -0.98
CLK3-218ENST00000566926 GEMIN7Q9H840 131 aaKnown RBP8.96□□□□□ -0.98
CLK3-218ENST00000566926 KLK12Q9UKR0 248 aa8.96□□□□□ -0.98
CLK3-218ENST00000566926 IGLV4-60A0A075B6I1 120 aa8.95□□□□□ -0.98
CLK3-218ENST00000566926 C11orf86A6NJI1 115 aa8.95□□□□□ -0.98
CLK3-218ENST00000566926 CDK2AP2O75956 126 aa8.95□□□□□ -0.98
CLK3-218ENST00000566926 ATOH7Q8N100 152 aa8.95□□□□□ -0.98
CLK3-218ENST00000566926 H3BRM9 83 aa8.94□□□□□ -0.98
CLK3-218ENST00000566926 CRPP02741 224 aa8.94□□□□□ -0.98
CLK3-218ENST00000566926 SS18Q15532 418 aa8.94□□□□□ -0.98
CLK3-218ENST00000566926 NTN5Q8WTR8 489 aaPredicted RBP8.94□□□□□ -0.98
CLK3-218ENST00000566926 UBE2WQ96B02 151 aa8.94□□□□□ -0.98
CLK3-218ENST00000566926 PAM16Q9Y3D7 125 aa8.94□□□□□ -0.98
CLK3-218ENST00000566926 DYNC1H1Q14204 4646 aaKnown RBP8.93□□□□□ -0.98
CLK3-218ENST00000566926 IGLV5-45A0A087WSX0 123 aa8.93□□□□□ -0.98
CLK3-218ENST00000566926 TRAV13-1A0A0B4J241 112 aa8.93□□□□□ -0.98
CLK3-218ENST00000566926 LRCOL1A6NCL2 159 aa8.93□□□□□ -0.98
CLK3-218ENST00000566926 TSTD3H0UI37 97 aa8.93□□□□□ -0.98
CLK3-218ENST00000566926 ANGP03950 147 aaKnown RBP8.93□□□□□ -0.98
CLK3-218ENST00000566926 SPATA45Q537H7 98 aa8.93□□□□□ -0.98
CLK3-218ENST00000566926 RNASE13Q5GAN3 156 aaKnown RBP8.93□□□□□ -0.98
CLK3-218ENST00000566926 ZC2HC1BQ5TFG8 222 aa8.93□□□□□ -0.98
CLK3-218ENST00000566926 IGKV2D-24A0A075B6R9 120 aa8.92□□□□□ -0.98
CLK3-218ENST00000566926 A0A0J9YXV3 536 aa8.92□□□□□ -0.98
CLK3-218ENST00000566926 REG3AQ06141 175 aa8.92□□□□□ -0.98
CLK3-218ENST00000566926 TMEM170BQ5T4T1 132 aa8.92□□□□□ -0.98
CLK3-218ENST00000566926 LINC00242Q5T6M2 205 aa8.92□□□□□ -0.98
CLK3-218ENST00000566926 PRR34Q9NV39 138 aa8.92□□□□□ -0.98
CLK3-218ENST00000566926 KIAA1109Q2LD37 5005 aa8.91□□□□□ -0.98
CLK3-218ENST00000566926 TRAV8-4A0A0B4J246 113 aa8.91□□□□□ -0.98
CLK3-218ENST00000566926 LINC00959A0A1B0GUT2 108 aa8.91□□□□□ -0.98
CLK3-218ENST00000566926 hDV102S1A0JD36 115 aa8.91□□□□□ -0.98
CLK3-218ENST00000566926 LINC00269Q8N2A0 174 aa8.91□□□□□ -0.98
CLK3-218ENST00000566926 Q8N814 137 aa8.91□□□□□ -0.98
CLK3-218ENST00000566926 E9PLD3 99 aa8.9□□□□□ -0.98
CLK3-218ENST00000566926 ZNF22P17026 224 aaPredicted RBP8.9□□□□□ -0.98
CLK3-218ENST00000566926 MIAQ16674 131 aa8.9□□□□□ -0.98
CLK3-218ENST00000566926 LINC00469Q8N7U9 141 aa8.9□□□□□ -0.98
CLK3-218ENST00000566926 STPG4Q8N801 248 aa8.9□□□□□ -0.98
CLK3-218ENST00000566926 C1orf43Q9BWL3 253 aa8.9□□□□□ -0.98
CLK3-218ENST00000566926 IGLV5-52A0A0A0MRZ9 124 aa8.89□□□□□ -0.99
CLK3-218ENST00000566926 TMEM223A0PJW6 202 aa8.89□□□□□ -0.99
CLK3-218ENST00000566926 GCSHP23434 173 aa8.89□□□□□ -0.99
CLK3-218ENST00000566926 LINC01561Q8N1V8 128 aa8.89□□□□□ -0.99
CLK3-218ENST00000566926 MAJINQ3KP22 176 aa8.88□□□□□ -0.99
CLK3-218ENST00000566926 ENHOQ6UWT2 76 aa8.88□□□□□ -0.99
CLK3-218ENST00000566926 PLEKHB2Q96CS7 222 aa8.88□□□□□ -0.99
CLK3-218ENST00000566926 UQCR10Q9UDW1 63 aa8.88□□□□□ -0.99
CLK3-218ENST00000566926 IGKV3OR2-268A0A0C4DH90 116 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 DLEU1O43261 78 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 COX8AP10176 69 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 C14orf177Q52M58 125 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 ANKRD39Q53RE8 183 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 CD164L2Q6UWJ8 174 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 CDKN2A-AS1Q9UH64 79 aa8.87□□□□□ -0.99
CLK3-218ENST00000566926 IGHV3OR16-9A0A0B4J2B5 98 aa8.86□□□□□ -0.99
CLK3-218ENST00000566926 IGHV1-58A0A0C4DH39 117 aa8.86□□□□□ -0.99
CLK3-218ENST00000566926 FUSP35637 526 aaKnown RBP eCLIP8.86□□□□□ -0.99
CLK3-218ENST00000566926 NMUP48645 174 aa8.86□□□□□ -0.99
CLK3-218ENST00000566926 MAPKAPK5-AS1Q8N8E1 139 aa8.86□□□□□ -0.99
CLK3-218ENST00000566926 HERC2O95714 4834 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 LRP1BQ9NZR2 4599 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 A0A087WZ39 114 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 LECT2O14960 151 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 LEPROTO15243 131 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 SLC25A34Q6PIV7 304 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 CHCHD10Q8WYQ3 142 aaPredicted RBP8.85□□□□□ -0.99
CLK3-218ENST00000566926 MIEN1Q9BRT3 115 aa8.85□□□□□ -0.99
CLK3-218ENST00000566926 IGLV5-39A0A0G2JS06 123 aa8.84□□□□□ -0.99
CLK3-218ENST00000566926 LGALS3P17931 250 aaKnown RBP8.84□□□□□ -0.99
CLK3-218ENST00000566926 XCL1P47992 114 aa8.84□□□□□ -0.99
CLK3-218ENST00000566926 COX6A2Q02221 97 aa8.84□□□□□ -0.99
CLK3-218ENST00000566926 WFDC2Q14508 124 aa8.84□□□□□ -0.99
CLK3-218ENST00000566926 SFTA2Q6UW10 78 aa8.84□□□□□ -0.99
CLK3-218ENST00000566926 CLPSL2Q6UWE3 100 aa8.84□□□□□ -0.99
CLK3-218ENST00000566926 J3QQQ9 107 aa8.83□□□□□ -1
CLK3-218ENST00000566926 COX7A2LO14548 114 aa8.83□□□□□ -1
CLK3-218ENST00000566926 KRTAP10-1P60331 282 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms