RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ATP6V1G1O75348 118 aa12.66□□□□□ -0.38
CLN3-225ENST00000566824 G0S2P27469 103 aa12.66□□□□□ -0.38
CLN3-225ENST00000566824 GVQW2A0A096LPI5 108 aaPredicted RBP12.65□□□□□ -0.38
CLN3-225ENST00000566824 COX7A2LO14548 114 aa12.65□□□□□ -0.38
CLN3-225ENST00000566824 NPSP0C0P6 89 aa12.65□□□□□ -0.38
CLN3-225ENST00000566824 HAMPP81172 84 aa12.65□□□□□ -0.38
CLN3-225ENST00000566824 IGHV1-58A0A0C4DH39 117 aa12.64□□□□□ -0.39
CLN3-225ENST00000566824 LINC00310P59036 64 aa12.64□□□□□ -0.39
CLN3-225ENST00000566824 CFAP161Q6P656 301 aa12.64□□□□□ -0.39
CLN3-225ENST00000566824 Q6ZN92 141 aa12.64□□□□□ -0.39
CLN3-225ENST00000566824 XGP55808 180 aa12.63□□□□□ -0.39
CLN3-225ENST00000566824 RAB5BP61020 215 aa12.63□□□□□ -0.39
CLN3-225ENST00000566824 CNBPP62633 177 aaKnown RBP12.63□□□□□ -0.39
CLN3-225ENST00000566824 PDZD11Q5EBL8 140 aa12.63□□□□□ -0.39
CLN3-225ENST00000566824 CDK2AP2O75956 126 aa12.62□□□□□ -0.39
CLN3-225ENST00000566824 HBDP02042 147 aa12.62□□□□□ -0.39
CLN3-225ENST00000566824 C2orf88Q9BSF0 95 aa12.62□□□□□ -0.39
CLN3-225ENST00000566824 MALP21145 153 aa12.62□□□□□ -0.39
CLN3-225ENST00000566824 BAGE3Q86Y29 109 aa12.62□□□□□ -0.39
CLN3-225ENST00000566824 C9orf163Q8N9P6 203 aa12.62□□□□□ -0.39
CLN3-225ENST00000566824 A0A0J9YXV3 536 aa12.61□□□□□ -0.39
CLN3-225ENST00000566824 NUPR1O60356 82 aa12.61□□□□□ -0.39
CLN3-225ENST00000566824 FAM19A3Q7Z5A8 133 aa12.61□□□□□ -0.39
CLN3-225ENST00000566824 CHCHD1Q96BP2 118 aaKnown RBP12.61□□□□□ -0.39
CLN3-225ENST00000566824 PAPPA-AS1Q5QFB9 102 aa12.6□□□□□ -0.39
CLN3-225ENST00000566824 CST9LQ9H4G1 147 aa12.6□□□□□ -0.39
CLN3-225ENST00000566824 IGLV4-69A0A075B6H9 119 aa12.59□□□□□ -0.39
CLN3-225ENST00000566824 LINC01549A6NIU2 74 aa12.59□□□□□ -0.39
CLN3-225ENST00000566824 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.59□□□□□ -0.39
CLN3-225ENST00000566824 SERF1AO75920 110 aa12.59□□□□□ -0.39
CLN3-225ENST00000566824 S100A1P23297 94 aa12.59□□□□□ -0.39
CLN3-225ENST00000566824 Q6ZSA8 131 aa12.59□□□□□ -0.39
CLN3-225ENST00000566824 FAM19A2Q8N3H0 131 aa12.59□□□□□ -0.39
CLN3-225ENST00000566824 IGHV3-64A0A075B6Q5 118 aa12.58□□□□□ -0.4
CLN3-225ENST00000566824 A0A087WZ39 114 aa12.58□□□□□ -0.4
CLN3-225ENST00000566824 SDIM1Q6ZPB5 146 aa12.58□□□□□ -0.4
CLN3-225ENST00000566824 PANO1I0J062 215 aa12.57□□□□□ -0.4
CLN3-225ENST00000566824 PMVKQ15126 192 aa12.57□□□□□ -0.4
CLN3-225ENST00000566824 ORAOV1Q8WV07 137 aa12.57□□□□□ -0.4
CLN3-225ENST00000566824 CDKN2A-AS1Q9UH64 79 aa12.56□□□□□ -0.4
CLN3-225ENST00000566824 ZNF561-AS1K7EIQ3 104 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BKO60814 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BJP06899 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BOP23527 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BBP33778 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BDP58876 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BCP62807 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 SPAG11BQ08648 103 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST2H2BEQ16778 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BHQ93079 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BNQ99877 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HIST1H2BMQ99879 126 aa12.55□□□□□ -0.4
CLN3-225ENST00000566824 HSBP1O75506 76 aa12.54□□□□□ -0.4
CLN3-225ENST00000566824 APOMO95445 188 aa12.54□□□□□ -0.4
CLN3-225ENST00000566824 NDUFA6P56556 154 aa12.54□□□□□ -0.4
CLN3-225ENST00000566824 Q6ZRU5 148 aa12.54□□□□□ -0.4
CLN3-225ENST00000566824 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.54□□□□□ -0.4
CLN3-225ENST00000566824 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.53□□□□□ -0.4
CLN3-225ENST00000566824 SYCNQ0VAF6 134 aa12.53□□□□□ -0.4
CLN3-225ENST00000566824 KIAA0087Q14695 138 aa12.53□□□□□ -0.4
CLN3-225ENST00000566824 OR10D4PQ8NGN7 298 aa12.53□□□□□ -0.4
CLN3-225ENST00000566824 TINCRA0A1B0GVN0 87 aa12.52□□□□□ -0.41
CLN3-225ENST00000566824 ATP5LO75964 103 aa12.52□□□□□ -0.41
CLN3-225ENST00000566824 HERVK_113P63121 156 aa12.52□□□□□ -0.41
CLN3-225ENST00000566824 CARD19Q96LW7 228 aa12.52□□□□□ -0.41
CLN3-225ENST00000566824 GEMIN7Q9H840 131 aaKnown RBP12.52□□□□□ -0.41
CLN3-225ENST00000566824 FAT1Q14517 4588 aa12.51□□□□□ -0.41
CLN3-225ENST00000566824 CHTF8P0CG12 524 aa12.51□□□□□ -0.41
CLN3-225ENST00000566824 C10orf25Q5T742 122 aa12.51□□□□□ -0.41
CLN3-225ENST00000566824 IGLV5-45A0A087WSX0 123 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 SCXQ7RTU7 201 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 LINC01561Q8N1V8 128 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 LINC00469Q8N7U9 141 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 C2orf48Q96LS8 159 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 CAMK2N2Q96S95 79 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 KRTAP4-5Q9BYR2 181 aa12.5□□□□□ -0.41
CLN3-225ENST00000566824 SMR3BP02814 79 aaPredicted RBP12.49□□□□□ -0.41
CLN3-225ENST00000566824 SEC11AP67812 179 aa12.49□□□□□ -0.41
CLN3-225ENST00000566824 IFI27L1Q96BM0 104 aa12.49□□□□□ -0.41
CLN3-225ENST00000566824 IGLC3P0DOY3 106 aa12.48□□□□□ -0.41
CLN3-225ENST00000566824 UNQ6190/PRO20217Q6UXQ8 127 aa12.48□□□□□ -0.41
CLN3-225ENST00000566824 CHAC1Q9BUX1 264 aa12.48□□□□□ -0.41
CLN3-225ENST00000566824 SMIM1B2RUZ4 78 aa12.47□□□□□ -0.41
CLN3-225ENST00000566824 C2orf82Q6UX34 121 aa12.47□□□□□ -0.41
CLN3-225ENST00000566824 CIRBP-AS1Q8TBR5 109 aa12.47□□□□□ -0.41
CLN3-225ENST00000566824 A0A096LNI7 61 aa12.46□□□□□ -0.41
CLN3-225ENST00000566824 SPINK8P0C7L1 97 aa12.46□□□□□ -0.41
CLN3-225ENST00000566824 C11orf86A6NJI1 115 aa12.45□□□□□ -0.42
CLN3-225ENST00000566824 FABP4P15090 132 aa12.45□□□□□ -0.42
CLN3-225ENST00000566824 ZNF22P17026 224 aaPredicted RBP12.45□□□□□ -0.42
CLN3-225ENST00000566824 CIRBPQ14011 172 aaKnown RBP12.45□□□□□ -0.42
CLN3-225ENST00000566824 TOMM7Q9P0U1 55 aa12.45□□□□□ -0.42
CLN3-225ENST00000566824 ABCA13Q86UQ4 5058 aa12.45□□□□□ -0.42
CLN3-225ENST00000566824 LEPROTL1O95214 131 aa12.44□□□□□ -0.42
CLN3-225ENST00000566824 Q8N1X5 172 aa12.44□□□□□ -0.42
CLN3-225ENST00000566824 C6orf48Q9UBA6 75 aa12.44□□□□□ -0.42
CLN3-225ENST00000566824 CHTOPQ9Y3Y2 248 aaKnown RBP12.44□□□□□ -0.42
CLN3-225ENST00000566824 IGKV2-24A0A0C4DH68 120 aa12.43□□□□□ -0.42
CLN3-225ENST00000566824 SPACA4Q8TDM5 124 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms