RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 TINCRA0A1B0GVN0 87 aa7.32□□□□□ -1.24
CLN3-224ENST00000566816 A0A1B0GVY2 172 aa7.32□□□□□ -1.24
CLN3-224ENST00000566816 XCL1P47992 114 aa7.32□□□□□ -1.24
CLN3-224ENST00000566816 HERVK_113P63121 156 aa7.32□□□□□ -1.24
CLN3-224ENST00000566816 IFI27L1Q96BM0 104 aa7.32□□□□□ -1.24
CLN3-224ENST00000566816 PGPEP1Q9NXJ5 209 aa7.32□□□□□ -1.24
CLN3-224ENST00000566816 A0A087WZ39 114 aa7.31□□□□□ -1.24
CLN3-224ENST00000566816 COX7A2LO14548 114 aa7.31□□□□□ -1.24
CLN3-224ENST00000566816 NDUFA6P56556 154 aa7.31□□□□□ -1.24
CLN3-224ENST00000566816 Q8N814 137 aa7.31□□□□□ -1.24
CLN3-224ENST00000566816 NTN5Q8WTR8 489 aaPredicted RBP7.31□□□□□ -1.24
CLN3-224ENST00000566816 HECTD4Q9Y4D8 3996 aa7.3□□□□□ -1.24
CLN3-224ENST00000566816 IGLV5-45A0A087WSX0 123 aa7.3□□□□□ -1.24
CLN3-224ENST00000566816 IGHV1-58A0A0C4DH39 117 aa7.3□□□□□ -1.24
CLN3-224ENST00000566816 APOMO95445 188 aa7.3□□□□□ -1.24
CLN3-224ENST00000566816 PRSS1P07477 247 aa7.3□□□□□ -1.24
CLN3-224ENST00000566816 CDPF1Q6NVV7 123 aa7.3□□□□□ -1.24
CLN3-224ENST00000566816 USP17L23D6RBM5 183 aa7.29□□□□□ -1.24
CLN3-224ENST00000566816 F8WDY8 70 aa7.29□□□□□ -1.24
CLN3-224ENST00000566816 IGLC3P0DOY3 106 aa7.29□□□□□ -1.24
CLN3-224ENST00000566816 COX6A2Q02221 97 aa7.29□□□□□ -1.24
CLN3-224ENST00000566816 ZC2HC1BQ5TFG8 222 aa7.29□□□□□ -1.24
CLN3-224ENST00000566816 SPATA12Q7Z6I5 190 aa7.29□□□□□ -1.24
CLN3-224ENST00000566816 GEMIN7Q9H840 131 aaKnown RBP7.29□□□□□ -1.24
CLN3-224ENST00000566816 GVQW2A0A096LPI5 108 aaPredicted RBP7.28□□□□□ -1.24
CLN3-224ENST00000566816 S100A6P06703 90 aa7.28□□□□□ -1.24
CLN3-224ENST00000566816 MALP21145 153 aa7.28□□□□□ -1.24
CLN3-224ENST00000566816 OR10D4PQ8NGN7 298 aa7.28□□□□□ -1.24
CLN3-224ENST00000566816 MAP1LC3CQ9BXW4 147 aa7.28□□□□□ -1.24
CLN3-224ENST00000566816 IGHV3-64A0A075B6Q5 118 aa7.27□□□□□ -1.25
CLN3-224ENST00000566816 A0A0J9YXV3 536 aa7.27□□□□□ -1.25
CLN3-224ENST00000566816 F8VRH5 84 aa7.27□□□□□ -1.25
CLN3-224ENST00000566816 CNBPP62633 177 aaKnown RBP7.27□□□□□ -1.25
CLN3-224ENST00000566816 WFDC2Q14508 124 aa7.27□□□□□ -1.25
CLN3-224ENST00000566816 C5orf38Q86SI9 138 aa7.27□□□□□ -1.25
CLN3-224ENST00000566816 C15orf56Q8N910 161 aa7.27□□□□□ -1.25
CLN3-224ENST00000566816 CHTOPQ9Y3Y2 248 aaKnown RBP7.27□□□□□ -1.25
CLN3-224ENST00000566816 IGLV4-69A0A075B6H9 119 aa7.26□□□□□ -1.25
CLN3-224ENST00000566816 FABP4P15090 132 aa7.26□□□□□ -1.25
CLN3-224ENST00000566816 C2orf48Q96LS8 159 aa7.26□□□□□ -1.25
CLN3-224ENST00000566816 CDKN2A-AS1Q9UH64 79 aa7.26□□□□□ -1.25
CLN3-224ENST00000566816 DNAH5Q8TE73 4624 aa7.26□□□□□ -1.25
CLN3-224ENST00000566816 C5orf52A6NGY3 159 aa7.25□□□□□ -1.25
CLN3-224ENST00000566816 H3BRM9 83 aa7.25□□□□□ -1.25
CLN3-224ENST00000566816 LECT2O14960 151 aa7.25□□□□□ -1.25
CLN3-224ENST00000566816 ODF1Q14990 250 aa7.25□□□□□ -1.25
CLN3-224ENST00000566816 PET117Q6UWS5 81 aa7.25□□□□□ -1.25
CLN3-224ENST00000566816 HIST3H2BBQ8N257 126 aa7.25□□□□□ -1.25
CLN3-224ENST00000566816 DYNC1H1Q14204 4646 aaKnown RBP7.24□□□□□ -1.25
CLN3-224ENST00000566816 PKHD1P08F94 4074 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.24□□□□□ -1.25
CLN3-224ENST00000566816 hDV102S1A0JD36 115 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 SYS1-DBNDD2H3BUS1 97 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 ZNF561-AS1K7EIQ3 104 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 AKR1D1P51857 326 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 LINC00469Q8N7U9 141 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 CHAC1Q9BUX1 264 aa7.24□□□□□ -1.25
CLN3-224ENST00000566816 MRPL35Q9NZE8 188 aaKnown RBP7.24□□□□□ -1.25
CLN3-224ENST00000566816 PLNP26678 52 aa7.23□□□□□ -1.25
CLN3-224ENST00000566816 S100A2P29034 98 aa7.23□□□□□ -1.25
CLN3-224ENST00000566816 KRTAP10-2P60368 255 aa7.23□□□□□ -1.25
CLN3-224ENST00000566816 KIAA0087Q14695 138 aa7.23□□□□□ -1.25
CLN3-224ENST00000566816 C9orf163Q8N9P6 203 aa7.23□□□□□ -1.25
CLN3-224ENST00000566816 LRP1BQ9NZR2 4599 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 IGLV5-52A0A0A0MRZ9 124 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 IGLV5-39A0A0G2JS06 123 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 C11orf86A6NJI1 115 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 SLPIP03973 132 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 ZNF22P17026 224 aaPredicted RBP7.22□□□□□ -1.25
CLN3-224ENST00000566816 SNRPEP62304 92 aaKnown RBP7.22□□□□□ -1.25
CLN3-224ENST00000566816 RNF151Q2KHN1 245 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 Q8IZM0 81 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 ORAOV1Q8WV07 137 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 HIST1H2BLQ99880 126 aa7.22□□□□□ -1.25
CLN3-224ENST00000566816 SMIM1B2RUZ4 78 aa7.21□□□□□ -1.26
CLN3-224ENST00000566816 DPM2O94777 84 aa7.21□□□□□ -1.26
CLN3-224ENST00000566816 C3orf79P0CE67 100 aa7.21□□□□□ -1.26
CLN3-224ENST00000566816 SPAG11BQ08648 103 aa7.21□□□□□ -1.26
CLN3-224ENST00000566816 LINC01545Q5VT33 79 aa7.21□□□□□ -1.26
CLN3-224ENST00000566816 PKIGQ9Y2B9 76 aa7.21□□□□□ -1.26
CLN3-224ENST00000566816 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.2□□□□□ -1.26
CLN3-224ENST00000566816 GCSHP23434 173 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 CXCL5P42830 114 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 SYCNQ0VAF6 134 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 HIGD2BQ4VC39 106 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 C6orf226Q5I0X4 101 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 TMEM170BQ5T4T1 132 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 DNAH8Q96JB1 4490 aa7.2□□□□□ -1.26
CLN3-224ENST00000566816 EPPK1P58107 5090 aaKnown RBP7.19□□□□□ -1.26
CLN3-224ENST00000566816 TMEM223A0PJW6 202 aa7.19□□□□□ -1.26
CLN3-224ENST00000566816 IGKCP01834 107 aa7.19□□□□□ -1.26
CLN3-224ENST00000566816 PRSS2P07478 247 aa7.19□□□□□ -1.26
CLN3-224ENST00000566816 SFTA2Q6UW10 78 aa7.19□□□□□ -1.26
CLN3-224ENST00000566816 TRBV30A0A0K0K1B3 111 aa7.18□□□□□ -1.26
CLN3-224ENST00000566816 C20orf202A1L168 122 aa7.18□□□□□ -1.26
CLN3-224ENST00000566816 C16orf90A8MZG2 172 aa7.18□□□□□ -1.26
CLN3-224ENST00000566816 H0Y8G0 127 aa7.18□□□□□ -1.26
CLN3-224ENST00000566816 NDUFA1O15239 70 aa7.18□□□□□ -1.26
CLN3-224ENST00000566816 CAMK2N2Q96S95 79 aa7.18□□□□□ -1.26
CLN3-224ENST00000566816 SPINK8P0C7L1 97 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms