RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ENHOQ6UWT2 76 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 ZNF833PQ6ZTB9 187 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 ORMDL1Q9P0S3 153 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 TMEM14CQ9P0S9 112 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 COL4A1P02462 1669 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 ARID1AO14497 2285 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 TRBV6-5A0A0K0K1A5 114 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 I3L3M4 83 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 BPY2O14599 106 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 NDUFA3O95167 84 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 CLPSP04118 112 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 ZNF137PP52743 207 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 NNATQ16517 81 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 Q8N377 158 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 Q8NBF4 154 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 MUC7Q8TAX7 377 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 Q9BRP9 147 aa3.32□□□□□ -1.88
VPS35-205ENST00000563984 MUC6Q6W4X9 2439 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 A0A1W2PPR1 153 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 IGIPA6NJ69 53 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 JMJD7-PLA2G4BH0Y9G9 81 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 M0R135 149 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 M0R1W7 72 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 M0R3E3 92 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 DEFA4P12838 97 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 SPANXN5Q5MJ07 72 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 Q6ZS52 159 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 LENEPQ9Y5L5 61 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 MUC3AQ02505 3323 aa3.31□□□□□ -1.88
VPS35-205ENST00000563984 IGKV1D-42A0A075B6H8 117 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 IGHV3OR16-8A0A075B7F1 116 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 IGHV1-3A0A0C4DH29 117 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 A6NDX4 124 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 RTL8CO15255 209 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 IGKV3-11P04433 115 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 Q8N9W7 124 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 HTTP42858 3142 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 PRUNE2Q8WUY3 3088 aa3.3□□□□□ -1.88
VPS35-205ENST00000563984 BDP1A6H8Y1 2624 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 TET2Q6N021 2002 aaPredicted RBP3.29□□□□□ -1.88
VPS35-205ENST00000563984 IGLV10-54A0A075B6I4 117 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 DNAH10OSP0CZ25 163 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 FDCSPQ8NFU4 85 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 ARHGAP5-AS1Q96IT6 56 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 TTTY10Q9BZA0 68 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 FAM215AQ9Y5M1 114 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 EYSQ5T1H1 3165 aa3.29□□□□□ -1.88
VPS35-205ENST00000563984 NUP214P35658 2090 aaPredicted RBP3.29□□□□□ -1.88
VPS35-205ENST00000563984 TET1Q8NFU7 2136 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 IGLV11-55A0A075B6I3 123 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 TRAV10A0A0B4J240 114 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 TRBV10-1A0A0K0K1A3 114 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 TRBV6-1A0A0K0K1D8 114 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 LRCOL1A6NCL2 159 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 LOC730098B7Z3J9 87 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 H3BPC8 53 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 KRTAP5-8O75690 187 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 IAPPP10997 89 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 TFF3Q07654 80 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 SPAG11BQ08648 103 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 SPAG11AQ6PDA7 123 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 Q86TA4 180 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 AMELXQ99217 191 aa3.28□□□□□ -1.88
VPS35-205ENST00000563984 TNRC6BQ9UPQ9 1833 aaKnown RBP3.28□□□□□ -1.88
VPS35-205ENST00000563984 LAMA2P24043 3122 aaKnown RBP3.28□□□□□ -1.88
VPS35-205ENST00000563984 NCOR1O75376 2440 aa3.28□□□□□ -1.89
VPS35-205ENST00000563984 MUC4Q99102 2169 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 TRAV21A0A0B4J279 112 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 A0A1B0GVX0 72 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 FXYD4P59646 89 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 KRTAP13-3Q3SY46 172 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 CSAG1Q6PB30 78 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.27□□□□□ -1.89
VPS35-205ENST00000563984 LINC01558Q9Y6Z2 57 aa3.27□□□□□ -1.89
VPS35-205ENST00000563984 C17orf98A8MV24 154 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 KPRPQ5T749 579 aaPredicted RBP3.26□□□□□ -1.89
VPS35-205ENST00000563984 KRTAP5-5Q701N2 237 aaPredicted RBP3.26□□□□□ -1.89
VPS35-205ENST00000563984 LINC00612Q8N6U2 182 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 SPANXA2-OT1Q8N9U9 137 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 Q8NAQ8 132 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 CIRBP-AS1Q8TBR5 109 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 LINC00208Q96KT6 92 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 C20orf166-AS1Q96NR2 134 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 PRR34Q9NV39 138 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 SPTBP11277 2137 aa3.26□□□□□ -1.89
VPS35-205ENST00000563984 ZNF407Q9C0G0 2248 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 PKD1L2Q7Z442 2459 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 IGHV1-18A0A0C4DH31 117 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 LCE6AA0A183 80 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 A0A1W2PNM2 257 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 H0YGX0 51 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 IGLV1-47P01700 117 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 LINC01590Q5TEZ4 76 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 MIR7-3HGQ8N6C7 128 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 WFDC9Q8NEX5 89 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 LINC01006Q8NI28 216 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 Q8TAT8 98 aa3.25□□□□□ -1.89
VPS35-205ENST00000563984 MRPL36Q9P0J6 103 aaKnown RBP3.25□□□□□ -1.89
VPS35-205ENST00000563984 R4GMQ9 66 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms