RNA–Protein interactions for RNA: ENST00000563688.5

SCAPER-208, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 2

Gene SCAPER, Length 549 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-208	ENST00000563688	RERGL	Q9H628	205 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	XIRP2	A4UGR9	3374 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	HTT	P42858	3142 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	VWF	P04275	2813 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TG	P01266	2768 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TENM2	Q9NT68	2774 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PSME4	Q14997	1843 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	ITPR3	Q14573	2671 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	LRRC37A2	A6NM11	1700 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PHLPP1	O60346	1717 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PRDM2	Q13029	1718 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	USP9X	Q93008	2570 aa	Predicted RBP	-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	CACNA1A	O00555	2505 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	CENPF	P49454	3210 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688		A0A0C4DFX4	3053 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SLIT1	O75093	1534 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	MRC1	P22897	1456 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	NLRP1	Q9C000	1473 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	DSP	P15924	2871 aa	Known RBP	-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SMG6	Q86US8	1419 aa	Known RBP	-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	PDZD2	O15018	2839 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	AKAP13	Q12802	2813 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SRRM2	Q9UQ35	2752 aa	Known RBP	-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	ATR	Q13535	2644 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	TCHH	Q07283	1943 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	C9orf92	A6NGG3	77 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688		M0R3E3	92 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	CCL22	O00626	93 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	COX6B1	P14854	86 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	S100A12	P80511	92 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	DEFB112	Q30KQ8	113 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688		Q8IZM0	81 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688		Q8N8P6	123 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	C1orf54	Q8WWF1	131 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	LINC00470	Q9BZP3	86 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	LINC00472	Q9H8W2	130 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	FREM2	Q5SZK8	3169 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	MYO9A	B2RTY4	2548 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	MTOR	P42345	2549 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	ANKHD1	Q8IWZ3	2542 aa	Known RBP	-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	ACAN	P16112	2415 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	DCHS2	Q6V1P9	2916 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	WDR87	Q6ZQQ6	2873 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	USF3	Q68DE3	2245 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	RAPGEF6	Q8TEU7	1601 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	BIVM-ERCC5	R4GMW8	1640 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	BICRA	Q9NZM4	1560 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SETBP1	Q9Y6X0	1596 aa		-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	USP9Y	O00507	2555 aa	Predicted RBP	-0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	FASN	P49327	2511 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	DMXL2	Q8TDJ6	3036 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	DMXL1	Q9Y485	3027 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	MAP1B	P46821	2468 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	RIF1	Q5UIP0	2472 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	WDR7	Q9Y4E6	1490 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	NBEA	Q8NFP9	2946 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	PRRC2C	Q9Y520	2896 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	TEX15	Q9BXT5	2789 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	LOC400499	M0QZD8	3231 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	RANBP2	P49792	3224 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	ANKRD11	Q6UB99	2663 aa	Predicted RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	BOD1L1	Q8NFC6	3051 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	FLNB	O75369	2602 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	FLNA	P21333	2647 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPAAR	A0A1B0GVQ0	90 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688		H3BQ15	152 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688		K7EP34	96 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	GNG7	O60262	68 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	TNF	P01375	233 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	BTG2	P78543	158 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	HMGN3	Q15651	99 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	DEFB109B	Q30KR1	87 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	NMS	Q5H8A3	153 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	SFTA2	Q6UW10	78 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	TTC9C	Q8N5M4	171 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	DEFB123	Q8N688	67 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	TMEM263	Q8WUH6	116 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	PP6455	Q8WZ26	134 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	LSM10	Q969L4	123 aa	Known RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	TSC22D3	Q99576	134 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	NDUFA4L2	Q9NRX3	87 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	SERP1	Q9Y6X1	66 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	MAP1A	P78559	2803 aa	Predicted RBP	-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	ZAN	Q9Y493	2812 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	C5orf42	Q9H799	3197 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	ITPR1	Q14643	2758 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	CFTR	P13569	1480 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	IQSEC2	Q5JU85	1478 aa		-0.03	□□□□□ -2.41
SCAPER-208	ENST00000563688	MGAM2	Q2M2H8	2515 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	CLIP1	P30622	1438 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	KDM3B	Q7LBC6	1761 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	CCDC168	Q8NDH2	2452 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	NF1	P21359	2839 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	PIEZO2	Q9H5I5	2752 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688		A0A0G2JMZ2	1700 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	ARAP2	Q8WZ64	1704 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	ATM	Q13315	3056 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	CFAP54	Q96N23	3096 aa		-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	GCN1	Q92616	2671 aa	Known RBP	-0.04	□□□□□ -2.42
SCAPER-208	ENST00000563688	TACC2	O95359	2948 aa		-0.04	□□□□□ -2.42

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms