RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 C1orf158Q8N1D5 194 aa4.56□□□□□ -1.68
CLK3-212ENST00000563418 B4DSR2 109 aa4.56□□□□□ -1.68
CLK3-212ENST00000563418 LINC00242Q5T6M2 205 aa4.56□□□□□ -1.68
CLK3-212ENST00000563418 LINC01548A6NM66 108 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 ODF3BA8MYP8 253 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 WFDC10BQ8IUB3 73 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 COL4A2P08572 1712 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 EPOPA6NHQ4 379 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 IGLV5-45A0A087WSX0 123 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 H0Y9J4 135 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 PRR4Q16378 134 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 HTN3P15516 51 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 GVINP1Q7Z2Y8 2422 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 GYPEP15421 78 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 CLPSL2Q6UWE3 100 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 Q6ZSV7 163 aa4.55□□□□□ -1.68
CLK3-212ENST00000563418 EP300Q09472 2414 aaPredicted RBP4.55□□□□□ -1.68
CLK3-212ENST00000563418 Q1T7F1 81 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 PRR9Q5T870 116 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 IGFL3Q6UXB1 125 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 LINC00337Q8N6G1 96 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 LTBP2Q14767 1821 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 ELOF1P60002 83 aaKnown RBP4.54□□□□□ -1.68
CLK3-212ENST00000563418 LINC00575Q6W349 94 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 M0R378 163 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 DEFB114Q30KQ6 69 aa4.54□□□□□ -1.68
CLK3-212ENST00000563418 LY6LH3BQJ8 138 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 CDC42SE2Q9NRR3 84 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 ANKHD1Q8IWZ3 2542 aaKnown RBP4.53□□□□□ -1.68
CLK3-212ENST00000563418 SEM1Q6ZVN7 128 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 RETNLBQ9BQ08 111 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 C10orf25Q5T742 122 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 CHCHD7Q9BUK0 85 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 Q6ZQT0 140 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 PTPRZ1P23471 2315 aaPredicted RBP4.53□□□□□ -1.68
CLK3-212ENST00000563418 ACACAQ13085 2346 aa4.53□□□□□ -1.68
CLK3-212ENST00000563418 CNOT1A5YKK6 2376 aaKnown RBP4.53□□□□□ -1.69
CLK3-212ENST00000563418 ZDBF2Q9HCK1 2354 aa4.53□□□□□ -1.69
CLK3-212ENST00000563418 BRD3OSQ6XYD6 125 aa4.52□□□□□ -1.69
CLK3-212ENST00000563418 Q6ZRU5 148 aa4.52□□□□□ -1.69
CLK3-212ENST00000563418 UNQ9165/PRO28630Q6UXU0 137 aa4.52□□□□□ -1.69
CLK3-212ENST00000563418 SPAG11AQ6PDA7 123 aa4.52□□□□□ -1.69
CLK3-212ENST00000563418 ZNF843Q8N446 348 aa4.52□□□□□ -1.69
CLK3-212ENST00000563418 K7EQG2 157 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 IGF1P05019 195 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 LITAFQ99732 161 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 LINC00474Q9P2X8 69 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 TM2D3Q9BRN9 247 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 LY6G6EA0A0G2JKS1 128 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 U3KQA8 63 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 CHCHD10Q8WYQ3 142 aaPredicted RBP4.51□□□□□ -1.69
CLK3-212ENST00000563418 H0Y9P7 68 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 REG3AQ06141 175 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 Q96MF0 132 aa4.51□□□□□ -1.69
CLK3-212ENST00000563418 IGLV10-54A0A075B6I4 117 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 TRAV22A0A0B4J277 110 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 Q8N2B8 174 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 WFDC13Q8IUB5 93 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 FAM218AQ96MZ4 157 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 FAM215AQ9Y5M1 114 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 LINC01356Q8N9X3 169 aa4.5□□□□□ -1.69
CLK3-212ENST00000563418 MSMBP08118 114 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 BPESC1Q9GZL8 116 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 RBM12B-AS1Q9P1G2 102 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 ZNF580Q9UK33 172 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 KIF25-AS1Q9Y6Z4 181 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 RUSC1-AS1Q66K80 236 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 Q9UF83 564 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 PRO0255Q9UI72 69 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 J3QKU1 62 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 C9orf116Q5BN46 136 aaPredicted RBP4.49□□□□□ -1.69
CLK3-212ENST00000563418 TP53AIP1Q9HCN2 124 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 TRAV10A0A0B4J240 114 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 C6orf223Q8N319 242 aa4.49□□□□□ -1.69
CLK3-212ENST00000563418 C2CD3Q4AC94 2353 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 C1orf137Q5JT78 98 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 SMIM29Q86T20 159 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 LOC101927531A0A1B0GV80 90 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 LINC00959A0A1B0GUT2 108 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 COX6A2Q02221 97 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 CDC42SE1Q9NRR8 79 aa4.48□□□□□ -1.69
CLK3-212ENST00000563418 TECTAO75443 2155 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 SPATA3Q8NHX4 192 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 CDSNQ15517 529 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 DEFB1P60022 68 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 MED13LQ71F56 2210 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 IGFL2Q6UWQ7 119 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 C11orf72Q8NBR9 251 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 MAP6D1Q9H9H5 199 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 PSCAO43653 123 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 C1orf64Q8NEQ6 169 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 C4orf3Q8WVX3 66 aa4.47□□□□□ -1.69
CLK3-212ENST00000563418 IGKV2D-24A0A075B6R9 120 aa4.46□□□□□ -1.69
CLK3-212ENST00000563418 LY6G6DO95868 133 aa4.46□□□□□ -1.69
CLK3-212ENST00000563418 OBSCN-AS1Q96MR7 158 aa4.46□□□□□ -1.7
CLK3-212ENST00000563418 H3BS24 57 aa4.46□□□□□ -1.7
CLK3-212ENST00000563418 ZFP36P26651 326 aaKnown RBP4.46□□□□□ -1.7
CLK3-212ENST00000563418 MDFIQ99750 246 aa4.46□□□□□ -1.7
CLK3-212ENST00000563418 A8MUN3 132 aa4.46□□□□□ -1.7
CLK3-212ENST00000563418 C9orf66Q5T8R8 295 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms