RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HIST1H2BHQ93079 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 LINC00526Q96FQ7 95 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 SCGB3A1Q96QR1 104 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BNQ99877 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BMQ99879 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 APOBP04114 4563 aaKnown RBP6.38□□□□□ -1.39
CLK3-208ENST00000562626 C16orf90A8MZG2 172 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 HBDP02042 147 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 HIGD2BQ4VC39 106 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 CD164L2Q6UWJ8 174 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 TEX43Q6ZNM6 134 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 ERASQ7Z444 233 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 C5orf38Q86SI9 138 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 BAGE3Q86Y29 109 aa6.37□□□□□ -1.39
CLK3-208ENST00000562626 IGHV3OR16-9A0A0B4J2B5 98 aa6.36□□□□□ -1.39
CLK3-208ENST00000562626 A0A0J9YXV3 536 aa6.36□□□□□ -1.39
CLK3-208ENST00000562626 C1orf196B1AJZ1 125 aa6.36□□□□□ -1.39
CLK3-208ENST00000562626 EREGO14944 169 aa6.36□□□□□ -1.39
CLK3-208ENST00000562626 CHCHD1Q96BP2 118 aaKnown RBP6.36□□□□□ -1.39
CLK3-208ENST00000562626 IGLV5-52A0A0A0MRZ9 124 aa6.35□□□□□ -1.39
CLK3-208ENST00000562626 NPSP0C0P6 89 aa6.35□□□□□ -1.39
CLK3-208ENST00000562626 RAB5BP61020 215 aa6.35□□□□□ -1.39
CLK3-208ENST00000562626 FAM19A3Q7Z5A8 133 aa6.35□□□□□ -1.39
CLK3-208ENST00000562626 VCX2Q9H322 139 aa6.35□□□□□ -1.39
CLK3-208ENST00000562626 GVQW2A0A096LPI5 108 aaPredicted RBP6.34□□□□□ -1.39
CLK3-208ENST00000562626 hDV102S1A0JD36 115 aa6.34□□□□□ -1.39
CLK3-208ENST00000562626 HSBP1O75506 76 aa6.34□□□□□ -1.39
CLK3-208ENST00000562626 CTAG1AP78358 180 aa6.34□□□□□ -1.39
CLK3-208ENST00000562626 S100A12P80511 92 aa6.34□□□□□ -1.39
CLK3-208ENST00000562626 Q6ZN92 141 aa6.34□□□□□ -1.39
CLK3-208ENST00000562626 CST9LQ9H4G1 147 aa6.34□□□□□ -1.39
CLK3-208ENST00000562626 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.33□□□□□ -1.4
CLK3-208ENST00000562626 COX7A2LO14548 114 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 G0S2P27469 103 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 HAMPP81172 84 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 PMVKQ15126 192 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 C2orf88Q9BSF0 95 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 PGPEP1Q9NXJ5 209 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 FAM30AQ9NZY2 134 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 CDKN2A-AS1Q9UH64 79 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 HSPG2P98160 4391 aa6.33□□□□□ -1.4
CLK3-208ENST00000562626 IGLV4-69A0A075B6H9 119 aa6.32□□□□□ -1.4
CLK3-208ENST00000562626 IGHV1-58A0A0C4DH39 117 aa6.32□□□□□ -1.4
CLK3-208ENST00000562626 GCSHP23434 173 aa6.32□□□□□ -1.4
CLK3-208ENST00000562626 CDPF1Q6NVV7 123 aa6.32□□□□□ -1.4
CLK3-208ENST00000562626 KRTAP4-5Q9BYR2 181 aa6.32□□□□□ -1.4
CLK3-208ENST00000562626 IGHV3-64A0A075B6Q5 118 aa6.31□□□□□ -1.4
CLK3-208ENST00000562626 A0A087WZ39 114 aa6.31□□□□□ -1.4
CLK3-208ENST00000562626 PANO1I0J062 215 aa6.31□□□□□ -1.4
CLK3-208ENST00000562626 NDUFA6P56556 154 aa6.31□□□□□ -1.4
CLK3-208ENST00000562626 CNBPP62633 177 aaKnown RBP6.31□□□□□ -1.4
CLK3-208ENST00000562626 C14orf177Q52M58 125 aa6.31□□□□□ -1.4
CLK3-208ENST00000562626 IFI27L1Q96BM0 104 aa6.31□□□□□ -1.4
CLK3-208ENST00000562626 IGLV5-45A0A087WSX0 123 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 LINC01549A6NIU2 74 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 ATP5LO75964 103 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 IGLC3P0DOY3 106 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 FABP4P15090 132 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 MALP21145 153 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 KIAA0087Q14695 138 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 COA6Q5JTJ3 125 aaKnown RBP6.3□□□□□ -1.4
CLK3-208ENST00000562626 PAPPA-AS1Q5QFB9 102 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 C9orf163Q8N9P6 203 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 ORAOV1Q8WV07 137 aa6.3□□□□□ -1.4
CLK3-208ENST00000562626 TINCRA0A1B0GVN0 87 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 C11orf86A6NJI1 115 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 ZNF22P17026 224 aaPredicted RBP6.29□□□□□ -1.4
CLK3-208ENST00000562626 XGP55808 180 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 SPAG11BQ08648 103 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 C10orf25Q5T742 122 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 CFAP161Q6P656 301 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 Q6ZRU5 148 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 CHAC1Q9BUX1 264 aa6.29□□□□□ -1.4
CLK3-208ENST00000562626 SMIM1B2RUZ4 78 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 LEPROTL1O95214 131 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 SPINK8P0C7L1 97 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 CHTF8P0CG12 524 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 HERVK_113P63121 156 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 C2orf82Q6UX34 121 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 Q6ZSA8 131 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 LINC00469Q8N7U9 141 aa6.28□□□□□ -1.4
CLK3-208ENST00000562626 GEMIN7Q9H840 131 aaKnown RBP6.28□□□□□ -1.4
CLK3-208ENST00000562626 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.28□□□□□ -1.4
CLK3-208ENST00000562626 H0Y8G0 127 aa6.27□□□□□ -1.41
CLK3-208ENST00000562626 ZNF561-AS1K7EIQ3 104 aa6.27□□□□□ -1.41
CLK3-208ENST00000562626 ODF1Q14990 250 aa6.27□□□□□ -1.41
CLK3-208ENST00000562626 UNQ6190/PRO20217Q6UXQ8 127 aa6.27□□□□□ -1.41
CLK3-208ENST00000562626 SDIM1Q6ZPB5 146 aa6.27□□□□□ -1.41
CLK3-208ENST00000562626 OR10D4PQ8NGN7 298 aa6.27□□□□□ -1.41
CLK3-208ENST00000562626 MRPL35Q9NZE8 188 aaKnown RBP6.27□□□□□ -1.41
CLK3-208ENST00000562626 CHTOPQ9Y3Y2 248 aaKnown RBP6.27□□□□□ -1.41
CLK3-208ENST00000562626 TRAV12-1A0A0B4J245 112 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 APOMO95445 188 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 SYCNQ0VAF6 134 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 LINC01561Q8N1V8 128 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 CARD19Q96LW7 228 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 PMCHL2Q9BQD1 86 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 C6orf48Q9UBA6 75 aa6.26□□□□□ -1.41
CLK3-208ENST00000562626 A0A096LNI7 61 aa6.25□□□□□ -1.41
CLK3-208ENST00000562626 F8VRH5 84 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms