RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TAX1BP3O14907 124 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 MIAQ16674 131 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 PRIMA1Q86XR5 153 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 SVIPQ8NHG7 77 aa5.26□□□□□ -1.57
VPS39-204ENST00000561818 NHP2Q9NX24 153 aaKnown RBP5.26□□□□□ -1.57
VPS39-204ENST00000561818 NIPBLQ6KC79 2804 aaeCLIP5.25□□□□□ -1.57
VPS39-204ENST00000561818 GAGE10A6NGK3 116 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 SMIM1B2RUZ4 78 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 PRSS2P07478 247 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 GAGE6Q13070 117 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 MAPKAPK5-AS1Q8N8E1 139 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 C11orf45Q8TAV5 145 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 OPRPNQ99935 248 aaPredicted RBP5.25□□□□□ -1.57
VPS39-204ENST00000561818 CDKN2A-AS1Q9UH64 79 aa5.25□□□□□ -1.57
VPS39-204ENST00000561818 TRAV10A0A0B4J240 114 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 A0A1W2PPM0 123 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 F8WDY8 70 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 IGHV3-30P01768 117 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 CRPP02741 224 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 COX6CP09669 75 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 IGHV3-30-5P0DP03 117 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 FXYD2P54710 66 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 KRTAP10-11P60412 298 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 RBX1P62877 108 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 COX17Q14061 63 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 C12orf74Q32Q52 190 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 CEMP1Q6PRD7 247 aaPredicted RBP5.24□□□□□ -1.57
VPS39-204ENST00000561818 CD164L2Q6UWJ8 174 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 Q8IZM0 81 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 FAM104AQ969W3 186 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 RAB37Q96AX2 223 aa5.24□□□□□ -1.57
VPS39-204ENST00000561818 CUBNO60494 3623 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 IGHV3OR16-9A0A0B4J2B5 98 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 LOC100131303A0A0U1RQF7 123 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 LINC00959A0A1B0GUT2 108 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 IBA57-AS1B1ANH7 110 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 COX7A2LO14548 114 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 SPINK8P0C7L1 97 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 TCTAP57738 103 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 C10orf126Q8N4M7 172 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 COX7B2Q8TF08 81 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 TM2D3Q9BRN9 247 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 Q9UF83 564 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 PRO1854Q9UHT4 67 aa5.23□□□□□ -1.57
VPS39-204ENST00000561818 K7EP34 96 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 ANGP03950 147 aaKnown RBP5.22□□□□□ -1.57
VPS39-204ENST00000561818 TSPEAR-AS2P59090 65 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 MEIG1Q5JSS6 88 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 SPATA3Q8NHX4 192 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 TTTY13Q9BZ97 58 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 Q9H8V8 135 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 CBY1Q9Y3M2 126 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 SPCS1Q9Y6A9 102 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 MAST4O15021 2626 aa5.22□□□□□ -1.57
VPS39-204ENST00000561818 A0A096LPF7 62 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 TRAV13-2A0A0B4J235 113 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 G3V4G9 280 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 H3BUT2 72 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 NHLRC4P0CG21 123 aaPredicted RBP5.21□□□□□ -1.58
VPS39-204ENST00000561818 HTN3P15516 51 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 MALP21145 153 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 REG3AQ06141 175 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 RNASE13Q5GAN3 156 aaKnown RBP5.21□□□□□ -1.58
VPS39-204ENST00000561818 CFAP161Q6P656 301 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 DEFB104AQ8WTQ1 72 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 ZNF625Q96I27 306 aaPredicted RBP5.21□□□□□ -1.58
VPS39-204ENST00000561818 PRR34Q9NV39 138 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 ERG28Q9UKR5 140 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 CELA1Q9UNI1 258 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 TENM1Q9UKZ4 2725 aa5.21□□□□□ -1.58
VPS39-204ENST00000561818 IGLV4-60A0A075B6I1 120 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 IGHV3-64A0A075B6Q5 118 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 DEFB131BA0A096LNP1 70 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 TRAV8-3A0A0A6YYJ7 113 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 IGLL5B9A064 214 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 F8W1H4 67 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 J3QR89 54 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 CKS1BP61024 79 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 C6orf226Q5I0X4 101 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 RMI2Q96E14 147 aa5.2□□□□□ -1.58
VPS39-204ENST00000561818 VWFP04275 2813 aa5.19□□□□□ -1.58
VPS39-204ENST00000561818 DEFB4AO15263 64 aa5.19□□□□□ -1.58
VPS39-204ENST00000561818 LINC01556Q5JQF7 62 aa5.19□□□□□ -1.58
VPS39-204ENST00000561818 LYPD5Q6UWN5 251 aa5.19□□□□□ -1.58
VPS39-204ENST00000561818 A0A0J9YWU9 116 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 TRBV30A0A0K0K1B3 111 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 A4D1N5 150 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 K7ERU9 68 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 M0QXV9 152 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 CFC1BP0CG36 223 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 CFC1P0CG37 223 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 CCL18P55774 89 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 COX6A2Q02221 97 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 Q6ZTC4 211 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 MUSTN1Q8IVN3 82 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 LINC00269Q8N2A0 174 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 LITAFQ99732 161 aa5.18□□□□□ -1.58
VPS39-204ENST00000561818 KLK5Q9Y337 293 aaPredicted RBP5.18□□□□□ -1.58
VPS39-204ENST00000561818 SNCGO76070 127 aa5.17□□□□□ -1.58
VPS39-204ENST00000561818 XCL1P47992 114 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms