RNA–Protein interactions for RNA: ENST00000558547.1

PIF1-204, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 268 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-204	ENST00000558547	VPS25	Q9BRG1	176 aa		4.19	□□□□□ -1.74
PIF1-204	ENST00000558547	ALKBH7	Q9BT30	221 aa	Predicted RBP	4.19	□□□□□ -1.74
PIF1-204	ENST00000558547	PKIG	Q9Y2B9	76 aa		4.19	□□□□□ -1.74
PIF1-204	ENST00000558547	IGLV4-69	A0A075B6H9	119 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	IGHV1-58	A0A0C4DH39	117 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547		A0A1W2PRE2	83 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	CCL25	O15444	150 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	SNAI2	O43623	268 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	SCGB1D1	O95968	90 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	CXorf1	O96002	111 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	SRP19	P09132	144 aa	Known RBP	4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	SMIM17	P0DL12	118 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	RPL18A	Q02543	176 aa	Known RBP	4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	PDZD11	Q5EBL8	140 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	KRTAP4-1	Q9BYQ7	146 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	TMEM167B	Q9NRX6	74 aa		4.18	□□□□□ -1.74
PIF1-204	ENST00000558547	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547		A0A087X002	238 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	TGIF2-C20orf24	A0A0A6YYL0	155 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	IGKV2-29	A2NJV5	120 aa	Predicted RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	MAP1LC3B2	A6NCE7	125 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	ZNF561-AS1	K7EIQ3	104 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	CAMP	P49913	170 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	MEF2B	Q02080	365 aa	Predicted RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	RNASEK	Q6P5S7	137 aa	Known RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	TEX43	Q6ZNM6	134 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	MTURN	Q8N3F0	131 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	NUP35	Q8NFH5	326 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	ANAPC16	Q96DE5	110 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	PGLYRP4	Q96LB8	373 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	OPRPN	Q99935	248 aa	Predicted RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	MAP1LC3B	Q9GZQ8	125 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	RPP21	Q9H633	154 aa	Known RBP	4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	UQCR10	Q9UDW1	63 aa		4.17	□□□□□ -1.74
PIF1-204	ENST00000558547	LINC00959	A0A1B0GUT2	108 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	ZNF727	A8MUV8	499 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	APOM	O95445	188 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	LTA	P01374	205 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	OR5AL1	P0C617	328 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	FGF6	P10767	208 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	UBE2G1	P62253	170 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	ZNF726P1	Q15940	193 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	TPRXL	Q17RH7	258 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	AMMECR1L	Q6DCA0	310 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	RASL11A	Q6T310	242 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	OR5A1	Q8NGJ0	315 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	FMC1	Q96HJ9	113 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	AP1S3	Q96PC3	154 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547	VAMP8	Q9BV40	100 aa		4.16	□□□□□ -1.74
PIF1-204	ENST00000558547		A0A1B0GV72	72 aa		4.15	□□□□□ -1.75
PIF1-204	ENST00000558547	IFNA1	P01562	189 aa		4.15	□□□□□ -1.75
PIF1-204	ENST00000558547	ESD	P10768	282 aa		4.15	□□□□□ -1.75
PIF1-204	ENST00000558547	ATP6V0C	P27449	155 aa		4.15	□□□□□ -1.75
PIF1-204	ENST00000558547	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.15	□□□□□ -1.75
PIF1-204	ENST00000558547	KRTAP7-1	Q8IUC3	87 aa		4.15	□□□□□ -1.75
PIF1-204	ENST00000558547	TRAV9-1	A0A075B6T8	112 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	NTF3	P20783	257 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	RNF151	Q2KHN1	245 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	OCIAD2	Q56VL3	154 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	FAM213B	Q8TBF2	198 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	CAMK2N2	Q96S95	79 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	MLST8	Q9BVC4	326 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	NAT8	Q9UHE5	227 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	LAMTOR2	Q9Y2Q5	125 aa		4.14	□□□□□ -1.75
PIF1-204	ENST00000558547	IGLV7-46	A0A075B6I9	117 aa		4.13	□□□□□ -1.75
PIF1-204	ENST00000558547	CRYGA	P11844	174 aa		4.13	□□□□□ -1.75
PIF1-204	ENST00000558547	TYMSOS	Q8TAI1	123 aa		4.13	□□□□□ -1.75
PIF1-204	ENST00000558547	PSMG3	Q9BT73	122 aa	Predicted RBP	4.13	□□□□□ -1.75
PIF1-204	ENST00000558547	TPPP3	Q9BW30	176 aa		4.13	□□□□□ -1.75
PIF1-204	ENST00000558547	CST9L	Q9H4G1	147 aa		4.13	□□□□□ -1.75
PIF1-204	ENST00000558547	TMEM250	H0YL14	139 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	PMCHL1	Q16048	86 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	BATF	Q16520	125 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	COX19	Q49B96	90 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	LCE2C	Q5TA81	110 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	CD164L2	Q6UWJ8	174 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	ANAPC11	Q9NYG5	84 aa		4.12	□□□□□ -1.75
PIF1-204	ENST00000558547	IGLC6	P0CF74	106 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	MAL	P21145	153 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	UBE2B	P63146	152 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	SERF2	P84101	59 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	SS18	Q15532	418 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	VAMP3	Q15836	100 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	CST9LP1	Q5W188	147 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	GATD1	Q8NB37	220 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	MBD3L1	Q8WWY6	194 aa		4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	RPL39L	Q96EH5	51 aa	Known RBP	4.11	□□□□□ -1.75
PIF1-204	ENST00000558547	CTXND1	A0A1B0GTU2	59 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547		H0Y8G0	127 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547		M0QXV9	152 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	COX7A2L	O14548	114 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	ZNF861P	O60384	105 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	APCS	P02743	223 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	IGLC3	P0DOY3	106 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	CTRL	P40313	264 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	KRTAP13-2	Q52LG2	175 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547	C10orf25	Q5T742	122 aa		4.1	□□□□□ -1.75
PIF1-204	ENST00000558547		Q6ZN92	141 aa		4.1	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms