RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 HIGD1BQ9P298 99 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 SPCS1Q9Y6A9 102 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 ANK2Q01484 3957 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 TRBV6-8A0A0A6YYG3 113 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 H3BRM9 83 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 XCL1P47992 114 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 UBE2D1P51668 147 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 DEFB121Q5J5C9 76 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 TENM2Q9NT68 2774 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 FABP2P12104 132 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 PTH2Q96A98 100 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 EDA2RQ9HAV5 297 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 CDC42SE2Q9NRR3 84 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 PRO0255Q9UI72 69 aa4.16□□□□□ -1.74
SYNE2-225ENST00000557060 LEPROTO15243 131 aa4.15□□□□□ -1.74
SYNE2-225ENST00000557060 CRYBA4P53673 196 aa4.15□□□□□ -1.74
SYNE2-225ENST00000557060 Q1RN00 199 aa4.15□□□□□ -1.74
SYNE2-225ENST00000557060 WFDC9Q8NEX5 89 aa4.15□□□□□ -1.74
SYNE2-225ENST00000557060 TM2D2Q9BX73 214 aa4.15□□□□□ -1.74
SYNE2-225ENST00000557060 Q9H8V8 135 aa4.15□□□□□ -1.74
SYNE2-225ENST00000557060 IGHV1-58A0A0C4DH39 117 aa4.15□□□□□ -1.75
SYNE2-225ENST00000557060 A0A1W2PPM0 123 aa4.15□□□□□ -1.75
SYNE2-225ENST00000557060 H3BMG7 143 aa4.15□□□□□ -1.75
SYNE2-225ENST00000557060 RNF151Q2KHN1 245 aa4.15□□□□□ -1.75
SYNE2-225ENST00000557060 ADAMTSL4-AS1Q5T5F5 129 aa4.15□□□□□ -1.75
SYNE2-225ENST00000557060 MUSTN1Q8IVN3 82 aa4.15□□□□□ -1.75
SYNE2-225ENST00000557060 A0A0J9YXY3 114 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 TINCRA0A1B0GVN0 87 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 A4D1N5 150 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 EIF4EBP3O60516 100 aaPredicted RBP4.14□□□□□ -1.75
SYNE2-225ENST00000557060 ANGP03950 147 aaKnown RBP4.14□□□□□ -1.75
SYNE2-225ENST00000557060 SPART-AS1P0CW21 52 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 MEIG1Q5JSS6 88 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 Q8NAQ8 132 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 IGLL5B9A064 214 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 ATP5G1P05496 136 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 SCGB1C2P0DMR2 95 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 KIR2DL5BQ8NHK3 375 aa4.14□□□□□ -1.75
SYNE2-225ENST00000557060 SMIM9A6NGZ8 99 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 PSMB2P49721 201 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 HERVK_113P63121 156 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 GTF2H5Q6ZYL4 71 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 LINC00269Q8N2A0 174 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 IGHV3-30P01768 117 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 IGHV3-30-5P0DP03 117 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 RBX1P62877 108 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 LCE2AQ5TA79 106 aaPredicted RBP4.13□□□□□ -1.75
SYNE2-225ENST00000557060 RNF183Q96D59 192 aa4.13□□□□□ -1.75
SYNE2-225ENST00000557060 SMIM1B2RUZ4 78 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 CFC1BP0CG36 223 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 CFC1P0CG37 223 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 PFN2P35080 140 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 RPL24P83731 157 aaKnown RBP4.12□□□□□ -1.75
SYNE2-225ENST00000557060 Q6ZTC4 211 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 SBSPONQ8IVN8 264 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 LINC00526Q96FQ7 95 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 A0A0J9YWU9 116 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 LYRM9A8MSI8 78 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 TMEM238C9JI98 176 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 IGHV3-33P01772 117 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 MIFP14174 115 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 K7EP34 96 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 NANOS2P60321 138 aaKnown RBP4.12□□□□□ -1.75
SYNE2-225ENST00000557060 TAL2Q16559 108 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 GTSF1LQ9H1H1 148 aa4.12□□□□□ -1.75
SYNE2-225ENST00000557060 CIDEAO60543 219 aa4.11□□□□□ -1.75
SYNE2-225ENST00000557060 TSPAN13O95857 204 aa4.11□□□□□ -1.75
SYNE2-225ENST00000557060 C2orf82Q6UX34 121 aa4.11□□□□□ -1.75
SYNE2-225ENST00000557060 KLK12Q9UKR0 248 aa4.11□□□□□ -1.75
SYNE2-225ENST00000557060 ZFAND6Q6FIF0 208 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 COL7A1Q02388 2944 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 LINC00959A0A1B0GUT2 108 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 LINC00158P58513 81 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 TIRAPP58753 221 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 CIRBPQ14011 172 aaKnown RBP4.1□□□□□ -1.75
SYNE2-225ENST00000557060 WFDC2Q14508 124 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 C6orf226Q5I0X4 101 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 PRO1854Q9UHT4 67 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 CSDC2Q9Y534 153 aaKnown RBP4.1□□□□□ -1.75
SYNE2-225ENST00000557060 SMAGPQ0VAQ4 97 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 SH2D6Q7Z4S9 175 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 LINC00612Q8N6U2 182 aa4.1□□□□□ -1.75
SYNE2-225ENST00000557060 MRPL23Q16540 153 aaKnown RBP4.09□□□□□ -1.75
SYNE2-225ENST00000557060 MALP21145 153 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 REG3AQ06141 175 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 SS18Q15532 418 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 ETDBQ3ZM63 59 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 UBE2WQ96B02 151 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 LITAFQ99732 161 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 ERG28Q9UKR5 140 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 ICOSQ9Y6W8 199 aa4.09□□□□□ -1.76
SYNE2-225ENST00000557060 KPRPQ5T749 579 aaPredicted RBP4.08□□□□□ -1.76
SYNE2-225ENST00000557060 COX7B2Q8TF08 81 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 SPANXB1Q9NS25 103 aaPredicted RBP4.08□□□□□ -1.76
SYNE2-225ENST00000557060 IGLV5-45A0A087WSX0 123 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 IGHV3OR16-9A0A0B4J2B5 98 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 NDUFA1O15239 70 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 MIAQ16674 131 aa4.08□□□□□ -1.76
SYNE2-225ENST00000557060 C9orf116Q5BN46 136 aaPredicted RBP4.08□□□□□ -1.76
SYNE2-225ENST00000557060 WFDC10BQ8IUB3 73 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms