RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 MRPS36P82909 103 aaKnown RBP4.28□□□□□ -1.72
LINC00643-203ENST00000555518 GAGE6Q13070 117 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 LELP1Q5T871 98 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 LYPD5Q6UWN5 251 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 SH2D6Q7Z4S9 175 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 LYSTQ99698 3801 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 CST9LQ9H4G1 147 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 PAM16Q9Y3D7 125 aa4.28□□□□□ -1.72
LINC00643-203ENST00000555518 CSDC2Q9Y534 153 aaKnown RBP4.28□□□□□ -1.72
LINC00643-203ENST00000555518 H0Y8G0 127 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 PMVKQ15126 192 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 ESRGQ1W209 222 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 MAJINQ3KP22 176 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 MPV17L2Q567V2 206 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 RNASE13Q5GAN3 156 aaKnown RBP4.27□□□□□ -1.73
LINC00643-203ENST00000555518 PAPPA-AS1Q5QFB9 102 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 Q6ZN92 141 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 ATOH7Q8N100 152 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 C12orf57Q99622 126 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 KRTAP4-4Q9BYR3 166 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 CDC42SE2Q9NRR3 84 aa4.27□□□□□ -1.73
LINC00643-203ENST00000555518 MRPL35Q9NZE8 188 aaKnown RBP4.27□□□□□ -1.73
LINC00643-203ENST00000555518 A0A1B0GUV1 79 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 KRTAP9-6A8MVA2 160 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 F8VRH5 84 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 PRSS1P07477 247 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 IGLC3P0DOY3 106 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 ZNF25P17030 456 aaPredicted RBP4.26□□□□□ -1.73
LINC00643-203ENST00000555518 RBX1P62877 108 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 FAM19A3Q7Z5A8 133 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 C15orf53Q8NAA6 179 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 CHCHD5Q9BSY4 110 aa4.26□□□□□ -1.73
LINC00643-203ENST00000555518 CHTOPQ9Y3Y2 248 aaKnown RBP4.26□□□□□ -1.73
LINC00643-203ENST00000555518 TGP01266 2768 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 DNAH1Q9P2D7 4330 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 TRAV9-2A0A087WT02 112 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 A0A087WYN8 130 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 hDV102S1A0JD36 115 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 C20orf202A1L168 122 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 C11orf86A6NJI1 115 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 UBE2D1P51668 147 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 NFE4Q86UQ8 179 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 WFDC10BQ8IUB3 73 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 ZNF664Q8N3J9 261 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 VCX2Q9H322 139 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 APLNQ9ULZ1 77 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 LINC00588Q9Y4M8 146 aa4.25□□□□□ -1.73
LINC00643-203ENST00000555518 DNAH6Q9C0G6 4158 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 VPS13DQ5THJ4 4388 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 IGLV5-45A0A087WSX0 123 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 A0A0J9YXV3 536 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 IGLL5B9A064 214 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 UBE2L6O14933 153 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 DPM2O94777 84 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 IGKCP01834 107 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 ZNF22P17026 224 aaPredicted RBP4.24□□□□□ -1.73
LINC00643-203ENST00000555518 LINC00242Q5T6M2 205 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 AMMECR1LQ6DCA0 310 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 OR5A1Q8NGJ0 315 aa4.24□□□□□ -1.73
LINC00643-203ENST00000555518 MRPS16Q9Y3D3 137 aaKnown RBP4.24□□□□□ -1.73
LINC00643-203ENST00000555518 TINCRA0A1B0GVN0 87 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 PLNP26678 52 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 SEC61BP60468 96 aaKnown RBP4.23□□□□□ -1.73
LINC00643-203ENST00000555518 COX6A2Q02221 97 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 SMAGPQ0VAQ4 97 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 STPG4Q8N801 248 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 TMEM101Q96IK0 257 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 UPK3BQ9BT76 320 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 CHAC1Q9BUX1 264 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 PRR34Q9NV39 138 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 ALMS1Q8TCU4 4167 aa4.23□□□□□ -1.73
LINC00643-203ENST00000555518 IGKV2D-26A0A0A0MRZ7 120 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 IGLV5-52A0A0A0MRZ9 124 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 TRAV13-1A0A0B4J241 112 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 TRAV8-6A0A0B4J262 113 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 LINC00959A0A1B0GUT2 108 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 TMEM223A0PJW6 202 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 NUPR2A6NF83 97 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 DNAH10OSP0CZ25 163 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 PKIAP61925 76 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 SPATA45Q537H7 98 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 LINC01556Q5JQF7 62 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 ENHOQ6UWT2 76 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 VAMP8Q9BV40 100 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 TP73-AS1Q9UF72 201 aa4.22□□□□□ -1.73
LINC00643-203ENST00000555518 TENM2Q9NT68 2774 aa4.21□□□□□ -1.73
LINC00643-203ENST00000555518 KMT2AQ03164 3969 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 TMEM262E9PQX1 116 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 IGHV3-30P01768 117 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 IGHV3-33P01772 117 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 IGHV3-30-3P0DP02 117 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 IGHV3-30-5P0DP03 117 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 TSPEAR-AS2P59090 65 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 REG3AQ06141 175 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 KRTAP26-1Q6PEX3 210 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 CLPSL2Q6UWE3 100 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 LINC00269Q8N2A0 174 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 C2orf88Q9BSF0 95 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 TTTY13Q9BZ97 58 aa4.21□□□□□ -1.74
LINC00643-203ENST00000555518 PRO1933Q9H354 126 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms