RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 RASL11AQ6T310 242 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 MRPL55Q7Z7F7 128 aaKnown RBP1.14□□□□□ -2.23
PTCH1-223ENST00000551623 Q86TA4 180 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 TMEM252Q8N6L7 170 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 PLEKHB2Q96CS7 222 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 PACRGQ96M98 296 aaPredicted RBP1.14□□□□□ -2.23
PTCH1-223ENST00000551623 WDR61Q9GZS3 305 aaKnown RBP1.14□□□□□ -2.23
PTCH1-223ENST00000551623 GEMIN7Q9H840 131 aaKnown RBP1.14□□□□□ -2.23
PTCH1-223ENST00000551623 CDC42SE2Q9NRR3 84 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 C6orf48Q9UBA6 75 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 ZFP30Q9Y2G7 519 aa1.14□□□□□ -2.23
PTCH1-223ENST00000551623 A0A1W2PRE2 83 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 GRIFINA4D1Z8 144 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 M0R036 132 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 NDUFA1O15239 70 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 SCGB1D1O95968 90 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 LTAP01374 205 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 NKX2-5P52952 324 aaPredicted RBP1.13□□□□□ -2.23
PTCH1-223ENST00000551623 KRTAP10-10P60014 251 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 RPL37P61927 97 aaKnown RBP1.13□□□□□ -2.23
PTCH1-223ENST00000551623 SPAG11BQ08648 103 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 AMMECR1LQ6DCA0 310 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 STX12Q86Y82 276 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 GNB1LQ9BYB4 327 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 C22orf24Q9Y442 160 aa1.13□□□□□ -2.23
PTCH1-223ENST00000551623 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.12□□□□□ -2.23
PTCH1-223ENST00000551623 IGKV3OR2-268A0A0C4DH90 116 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 TRBV6-5A0A0K0K1A5 114 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 IGKV2-29A2NJV5 120 aaPredicted RBP1.12□□□□□ -2.23
PTCH1-223ENST00000551623 FAM25EA8MYX2 175 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 FAM25AB3EWG3 89 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 FAM25CB3EWG5 89 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 FAM25GB3EWG6 89 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 C17orf112F2Z3M2 114 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 NDUFB6O95139 128 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 IGLC6P0CF74 106 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 STAG3L2P0CL84 134 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 STAG3L3P0CL85 134 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 FAUP35544 74 aaKnown RBP1.12□□□□□ -2.23
PTCH1-223ENST00000551623 NDUFV3P56181 108 aaKnown RBP1.12□□□□□ -2.23
PTCH1-223ENST00000551623 AP3S2P59780 193 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 UBE2G2P60604 165 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 LINC00483Q53H64 154 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 LYZL1Q6UWQ5 148 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 UNQ6190/PRO20217Q6UXQ8 127 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 TMUB2Q71RG4 321 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 SSBP3-AS1Q7Z2R9 100 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 HIST1H2BAQ96A08 127 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 TMEM101Q96IK0 257 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 SPRR4Q96PI1 79 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 TCEAL7Q9BRU2 100 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 TIMM21Q9BVV7 248 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 CNFNQ9BYD5 112 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 NKX6-2Q9C056 277 aaPredicted RBP1.12□□□□□ -2.23
PTCH1-223ENST00000551623 RAB26Q9ULW5 256 aa1.12□□□□□ -2.23
PTCH1-223ENST00000551623 ZNF727A8MUV8 499 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 L7N2F9 121 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 UPK1BO75841 260 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 APCSP02743 223 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 ARL14EPLP0DKL9 152 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 SMIM17P0DL12 118 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 PVALBP20472 110 aaPredicted RBP1.11□□□□□ -2.23
PTCH1-223ENST00000551623 GCHFRP30047 84 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 NCS1P62166 190 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 SPANXN1Q5VSR9 72 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 RNASEKQ6P5S7 137 aaKnown RBP1.11□□□□□ -2.23
PTCH1-223ENST00000551623 LINC01561Q8N1V8 128 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 MCFD2Q8NI22 146 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 ORAOV1Q8WV07 137 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 FAM104AQ969W3 186 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 MRAP2Q96G30 205 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 FMC1Q96HJ9 113 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 BTF3L4Q96K17 158 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 CNBD2Q96M20 576 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 TMEM167BQ9NRX6 74 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 MCUBQ9NWR8 336 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 ALG5Q9Y673 324 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 MUC12Q9UKN1 5478 aa1.11□□□□□ -2.23
PTCH1-223ENST00000551623 TMSB15BA0A087X1C1 80 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 TRBV27A0A0K0K1C4 114 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 C20orf202A1L168 122 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 RAB19A4D1S5 217 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 SDHAF1A6NFY7 115 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 F2Z2F3 143 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 PEX7O00628 323 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 TRGC1P0CF51 173 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 LGALS3P17931 250 aaKnown RBP1.1□□□□□ -2.23
PTCH1-223ENST00000551623 UBE2AP49459 152 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 FHITP49789 147 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 BCAP31P51572 246 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 POLR2KP53803 58 aaKnown RBP1.1□□□□□ -2.23
PTCH1-223ENST00000551623 FOXA3P55318 350 aaPredicted RBP1.1□□□□□ -2.23
PTCH1-223ENST00000551623 RPS20P60866 119 aaKnown RBP1.1□□□□□ -2.23
PTCH1-223ENST00000551623 VBP1P61758 197 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 PRLHP81277 87 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 NEDD8Q15843 81 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 CNPY1Q3B7I2 92 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 C6orf99Q4VX62 202 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 Q5XG85 94 aa1.1□□□□□ -2.23
PTCH1-223ENST00000551623 MZT2BQ6NZ67 158 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms