RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 MROH2BQ7Z745 1585 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 TULP4Q9NRJ4 1543 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 DNAJC13O75165 2243 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 KIAA0100Q14667 2235 aaKnown RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 PRRC2BQ5JSZ5 2229 aaKnown RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 INTS1Q8N201 2190 aaKnown RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 IGKV3-7A0A075B6H7 116 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 TRBV6-6A0A0A6YYG2 114 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 TRAV12-1A0A0B4J245 112 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 TRBV10-1A0A0K0K1A3 114 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 A0A1B0GUT8 65 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 LINC01546A6NGU7 62 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 IGIPA6NJ69 53 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 IGKV1-17P01599 117 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 ARL14EPLP0DKL9 152 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 COX6B1P14854 86 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 PI4KAP42356 2102 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 ZNF137PP52743 207 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 ERHP84090 104 aaKnown RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 ESPL1Q14674 2120 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 C1orf137Q5JT78 98 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 C9orf129Q5T035 196 aaKnown RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 KPRPQ5T749 579 aaPredicted RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 FAM74A4Q5TZK3 123 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 HCP5Q6MZN7 132 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 ZNF833PQ6ZTB9 187 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 UBALD1Q8TB05 177 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 RNF5Q99942 180 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 UBL5Q9BZL1 73 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 LENEPQ9Y5L5 61 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 DOCK11Q5JSL3 2073 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 PCDH15Q96QU1 1955 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 PTPRDP23468 1912 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 MYOM1P52179 1685 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 CLTCQ00610 1675 aaKnown RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 LRP6O75581 1613 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 PAPPAQ13219 1627 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 USP32Q8NFA0 1604 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 ATP7AQ04656 1500 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 TET1Q8NFU7 2136 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 PLXNA2O75051 1894 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 PLXNA1Q9UIW2 1896 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 KIAA1549LQ6ZVL6 1849 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 NUPR2A6NF83 97 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 C10orf113Q5VZT2 155 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 Q5W150 140 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 DMAC1Q96GE9 116 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 Q9BRP9 147 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 TMEM14CQ9P0S9 112 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 KLK9Q9UKQ9 250 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 SDK1Q7Z5N4 2213 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 POLR1AO95602 1720 aaPredicted RBP1.25□□□□□ -2.21
LIMA1-207ENST00000551486 COL6A3P12111 3177 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 PIK3C2AO00443 1686 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 TOPAZ1Q8N9V7 1692 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 BPTFQ12830 3046 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 LRP5O75197 1615 aa1.25□□□□□ -2.21
LIMA1-207ENST00000551486 EIF2AK4Q9P2K8 1649 aaKnown RBP1.25□□□□□ -2.21
LIMA1-207ENST00000551486 PLXNA3P51805 1871 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ABCA4P78363 2273 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 SIP14410 1827 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 SLX4Q8IY92 1834 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ANKRD36CQ5JPF3 1778 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ZNF462Q96JM2 2506 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 TJP1Q07157 1748 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 WDR90Q96KV7 1748 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 TNS1Q9HBL0 1735 aaKnown RBP1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ADAMTS7Q9UKP4 1686 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 CACNA1GO43497 2377 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 IGKV3OR2-268A0A0C4DH90 116 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 A0A1B0GU33 70 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 A0A1W2PPR1 153 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 IGLV7-43P04211 117 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 CTSGP08311 255 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 NDPQ00604 133 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 DEFB116Q30KQ4 102 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 SPATA8Q6RVD6 105 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 TYMSOSQ8TAI1 123 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 COX7B2Q8TF08 81 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ZCCHC13Q8WW36 166 aaKnown RBP1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ZNF625Q96I27 306 aaPredicted RBP1.24□□□□□ -2.21
LIMA1-207ENST00000551486 LINC00208Q96KT6 92 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 R4GMQ9 66 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 EML5Q05BV3 1969 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ANKRD36A6QL64 1941 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 ABCC8Q09428 1581 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 MAST1Q9Y2H9 1570 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 PCLOQ9Y6V0 5065 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 MYO16Q9Y6X6 1858 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 SLIT1O75093 1534 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 RP1P56715 2156 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 BTAF1O14981 1849 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 MUC22E2RYF6 1773 aaPredicted RBP1.24□□□□□ -2.21
LIMA1-207ENST00000551486 RGPD8O14715 1765 aaPredicted RBP1.24□□□□□ -2.21
LIMA1-207ENST00000551486 RGPD5Q99666 1765 aa1.24□□□□□ -2.21
LIMA1-207ENST00000551486 NUP188Q5SRE5 1749 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 CDC42BPBQ9Y5S2 1711 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 CFAP43Q8NDM7 1665 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 CHD8Q9HCK8 2581 aa1.23□□□□□ -2.21
LIMA1-207ENST00000551486 MALRD1Q5VYJ5 2156 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 212.5 ms