RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 Q6ZVH6 145 aa9.3□□□□□ -0.92
PTCH1-215ENST00000547672 CEND1Q8N111 149 aa9.3□□□□□ -0.92
PTCH1-215ENST00000547672 MRAPQ8TCY5 172 aa9.3□□□□□ -0.92
PTCH1-215ENST00000547672 SPANXB1Q9NS25 103 aaPredicted RBP9.3□□□□□ -0.92
PTCH1-215ENST00000547672 LINC00959A0A1B0GUT2 108 aa9.29□□□□□ -0.92
PTCH1-215ENST00000547672 TMEM238C9JI98 176 aa9.29□□□□□ -0.92
PTCH1-215ENST00000547672 COPS9Q8WXC6 57 aa9.29□□□□□ -0.92
PTCH1-215ENST00000547672 TTTY13Q9BZ97 58 aa9.29□□□□□ -0.92
PTCH1-215ENST00000547672 NDUFA12Q9UI09 145 aa9.29□□□□□ -0.92
PTCH1-215ENST00000547672 TRRAPQ9Y4A5 3859 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 IGLV5-39A0A0G2JS06 123 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 PRB2P02812 416 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-215ENST00000547672 SPINK8P0C7L1 97 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 NANOS2P60321 138 aaKnown RBP9.28□□□□□ -0.92
PTCH1-215ENST00000547672 HERV-K104P63124 156 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 ZFAND6Q6FIF0 208 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 B9D2Q9BPU9 175 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 TP73-AS1Q9UF72 201 aa9.28□□□□□ -0.92
PTCH1-215ENST00000547672 TIMM17BO60830 172 aa9.27□□□□□ -0.93
PTCH1-215ENST00000547672 ANGP03950 147 aaKnown RBP9.27□□□□□ -0.93
PTCH1-215ENST00000547672 SMIM13P0DJ93 91 aa9.27□□□□□ -0.93
PTCH1-215ENST00000547672 COX6A2Q02221 97 aa9.27□□□□□ -0.93
PTCH1-215ENST00000547672 IGHV3-64A0A075B6Q5 118 aa9.26□□□□□ -0.93
PTCH1-215ENST00000547672 A0A087WZ39 114 aa9.26□□□□□ -0.93
PTCH1-215ENST00000547672 NDUFA1O15239 70 aa9.26□□□□□ -0.93
PTCH1-215ENST00000547672 TRAV8-3A0A0A6YYJ7 113 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 TRAV8-4A0A0B4J246 113 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 IGHV3OR16-9A0A0B4J2B5 98 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 IGKV3OR2-268A0A0C4DH90 116 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 A0A0J9YXY3 114 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 SMIM1B2RUZ4 78 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 REG3AQ06141 175 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 CD164L2Q6UWJ8 174 aa9.25□□□□□ -0.93
PTCH1-215ENST00000547672 TSPEAR-AS2P59090 65 aa9.24□□□□□ -0.93
PTCH1-215ENST00000547672 RPL24P83731 157 aaKnown RBP9.24□□□□□ -0.93
PTCH1-215ENST00000547672 LINC00269Q8N2A0 174 aa9.24□□□□□ -0.93
PTCH1-215ENST00000547672 IFITM1P13164 125 aa9.23□□□□□ -0.93
PTCH1-215ENST00000547672 COX7A2LO14548 114 aa9.22□□□□□ -0.93
PTCH1-215ENST00000547672 APOMO95445 188 aa9.22□□□□□ -0.93
PTCH1-215ENST00000547672 CRPP02741 224 aa9.22□□□□□ -0.93
PTCH1-215ENST00000547672 PRSS2P07478 247 aa9.22□□□□□ -0.93
PTCH1-215ENST00000547672 COX7B2Q8TF08 81 aa9.22□□□□□ -0.93
PTCH1-215ENST00000547672 COX11Q9Y6N1 276 aa9.22□□□□□ -0.93
PTCH1-215ENST00000547672 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.21□□□□□ -0.94
PTCH1-215ENST00000547672 A0A1B0GV90 55 aa9.21□□□□□ -0.94
PTCH1-215ENST00000547672 CCL18P55774 89 aa9.21□□□□□ -0.94
PTCH1-215ENST00000547672 SPANXDQ9BXN6 97 aa9.21□□□□□ -0.94
PTCH1-215ENST00000547672 PRR34Q9NV39 138 aa9.21□□□□□ -0.94
PTCH1-215ENST00000547672 SPANXCQ9NY87 97 aa9.21□□□□□ -0.94
PTCH1-215ENST00000547672 MALP21145 153 aa9.2□□□□□ -0.94
PTCH1-215ENST00000547672 XCL1P47992 114 aa9.2□□□□□ -0.94
PTCH1-215ENST00000547672 MIAQ16674 131 aa9.2□□□□□ -0.94
PTCH1-215ENST00000547672 C6orf226Q5I0X4 101 aa9.2□□□□□ -0.94
PTCH1-215ENST00000547672 CHCHD10Q8WYQ3 142 aaPredicted RBP9.2□□□□□ -0.94
PTCH1-215ENST00000547672 Q9H8V8 135 aa9.2□□□□□ -0.94
PTCH1-215ENST00000547672 C9orf118A6NHY6 69 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 TAX1BP3O14907 124 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 IGHV3-30P01768 117 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 IGHV3-30-5P0DP03 117 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 CXCL5P42830 114 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 FXYD2P54710 66 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 ESRGQ1W209 222 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 Q8IZM0 81 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 C10orf126Q8N4M7 172 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 PPDPFQ9H3Y8 114 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 NHP2Q9NX24 153 aaKnown RBP9.19□□□□□ -0.94
PTCH1-215ENST00000547672 KLK12Q9UKR0 248 aa9.19□□□□□ -0.94
PTCH1-215ENST00000547672 A0A1B0GWB2 263 aa9.18□□□□□ -0.94
PTCH1-215ENST00000547672 K7EP13 123 aa9.18□□□□□ -0.94
PTCH1-215ENST00000547672 LINC01556Q5JQF7 62 aa9.18□□□□□ -0.94
PTCH1-215ENST00000547672 C5orf38Q86SI9 138 aa9.18□□□□□ -0.94
PTCH1-215ENST00000547672 ZNF625Q96I27 306 aaPredicted RBP9.18□□□□□ -0.94
PTCH1-215ENST00000547672 NOTCH1P46531 2555 aa9.18□□□□□ -0.94
PTCH1-215ENST00000547672 MEIG1Q5JSS6 88 aa9.17□□□□□ -0.94
PTCH1-215ENST00000547672 CFAP161Q6P656 301 aa9.17□□□□□ -0.94
PTCH1-215ENST00000547672 TOMM7Q9P0U1 55 aa9.17□□□□□ -0.94
PTCH1-215ENST00000547672 IBA57-AS1B1ANH7 110 aa9.16□□□□□ -0.94
PTCH1-215ENST00000547672 IGHV3-33P01772 117 aa9.16□□□□□ -0.94
PTCH1-215ENST00000547672 CKS1BP61024 79 aa9.16□□□□□ -0.94
PTCH1-215ENST00000547672 KLK5Q9Y337 293 aaPredicted RBP9.16□□□□□ -0.94
PTCH1-215ENST00000547672 ANK2Q01484 3957 aa9.16□□□□□ -0.94
PTCH1-215ENST00000547672 CMYA5Q8N3K9 4069 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 NBEAL1Q6ZS30 2694 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 IGLL5B9A064 214 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 DNAH10OSP0CZ25 163 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 VAMP3Q15836 100 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 LYRM7Q5U5X0 104 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 CLPSL2Q6UWE3 100 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 MUSTN1Q8IVN3 82 aa9.15□□□□□ -0.94
PTCH1-215ENST00000547672 MGAM2Q2M2H8 2515 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 GTF2H5Q6ZYL4 71 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 MUC7Q8TAX7 377 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 RAB37Q96AX2 223 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 UBE2WQ96B02 151 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 RMI2Q96E14 147 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 DNAH3Q8TD57 4116 aa9.14□□□□□ -0.95
PTCH1-215ENST00000547672 GAGE12HA6NDE8 117 aa9.13□□□□□ -0.95
PTCH1-215ENST00000547672 F8WDY8 70 aa9.13□□□□□ -0.95
PTCH1-215ENST00000547672 FABP2P12104 132 aa9.13□□□□□ -0.95
PTCH1-215ENST00000547672 FOXI1Q12951 378 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms