RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	MAP1LC3C	Q9BXW4	147 aa		6.74	□□□□□ -1.33
CPSF7-221	ENST00000543545		A0A087WTM6	91 aa		6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	USP17L23	D6RBM5	183 aa		6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	SNRPE	P62304	92 aa	Known RBP	6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	HERVK_113	P63121	156 aa		6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	KRTAP26-1	Q6PEX3	210 aa		6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	TMA7	Q9Y2S6	64 aa	Known RBP	6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	CHTOP	Q9Y3Y2	248 aa	Known RBP	6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	DNAH10	Q8IVF4	4471 aa		6.73	□□□□□ -1.33
CPSF7-221	ENST00000543545	COX6A2	Q02221	97 aa		6.72	□□□□□ -1.33
CPSF7-221	ENST00000543545	LINC00469	Q8N7U9	141 aa		6.72	□□□□□ -1.33
CPSF7-221	ENST00000543545	PACRG	Q96M98	296 aa	Predicted RBP	6.72	□□□□□ -1.33
CPSF7-221	ENST00000543545	DNAH2	Q9P225	4427 aa		6.72	□□□□□ -1.33
CPSF7-221	ENST00000543545	TRAV12-1	A0A0B4J245	112 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	TINCR	A0A1B0GVN0	87 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	LRCOL1	A6NCL2	159 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	APOM	O95445	188 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	KRTDAP	P60985	99 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	WFDC2	Q14508	124 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	C14orf177	Q52M58	125 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	HIST3H2BB	Q8N257	126 aa		6.71	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGHV3OR16-9	A0A0B4J2B5	98 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGHV1-58	A0A0C4DH39	117 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	hDV102S1	A0JD36	115 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545		H3BRM9	83 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	HIGD2B	Q4VC39	106 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	FAM19A3	Q7Z5A8	133 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	CHAC1	Q9BUX1	264 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	MRPL35	Q9NZE8	188 aa	Known RBP	6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	CDKN2A-AS1	Q9UH64	79 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	DNAH17	Q9UFH2	4485 aa		6.7	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545		A0A087WZ39	114 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545		F8VRH5	84 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545	ZNF561-AS1	K7EIQ3	104 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGLC3	P0DOY3	106 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545	TMEM170B	Q5T4T1	132 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545		Q8N814	137 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545	ORAOV1	Q8WV07	137 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545	PMCHL2	Q9BQD1	86 aa		6.69	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGLV4-69	A0A075B6H9	119 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	C5orf52	A6NGY3	159 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	C11orf86	A6NJI1	115 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	SYS1-DBNDD2	H3BUS1	97 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	ODF1	Q14990	250 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	PET117	Q6UWS5	81 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	SPATA12	Q7Z6I5	190 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	HIST1H2BL	Q99880	126 aa		6.68	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGHV3-64	A0A075B6Q5	118 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	C20orf202	A1L168	122 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	DPM2	O94777	84 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	PRSS2	P07478	247 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	SPINK8	P0C7L1	97 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	C3orf79	P0CE67	100 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	FUS	P35637	526 aa	Known RBP eCLIP	6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	SPAG11B	Q08648	103 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	LINC01561	Q8N1V8	128 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	C15orf56	Q8N910	161 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	LINC00526	Q96FQ7	95 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	TOMM7	Q9P0U1	55 aa		6.67	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGLV5-45	A0A087WSX0	123 aa		6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGLV5-52	A0A0A0MRZ9	124 aa		6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	ZNF22	P17026	224 aa	Predicted RBP	6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	PLN	P26678	52 aa		6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	OR10D4P	Q8NGN7	298 aa		6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	PGPEP1	Q9NXJ5	209 aa		6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	FRAS1	Q86XX4	4008 aa		6.66	□□□□□ -1.34
CPSF7-221	ENST00000543545	GVQW2	A0A096LPI5	108 aa	Predicted RBP	6.65	□□□□□ -1.34
CPSF7-221	ENST00000543545	IGKC	P01834	107 aa		6.65	□□□□□ -1.34
CPSF7-221	ENST00000543545	C6orf226	Q5I0X4	101 aa		6.65	□□□□□ -1.34
CPSF7-221	ENST00000543545	NTN5	Q8WTR8	489 aa	Predicted RBP	6.65	□□□□□ -1.34
CPSF7-221	ENST00000543545	KRTAP3-3	Q9BYR6	98 aa		6.65	□□□□□ -1.34
CPSF7-221	ENST00000543545	KRTAP3-2	Q9BYR7	98 aa		6.65	□□□□□ -1.34
CPSF7-221	ENST00000543545	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	6.64	□□□□□ -1.35
CPSF7-221	ENST00000543545	SMIM1	B2RUZ4	78 aa		6.64	□□□□□ -1.35
CPSF7-221	ENST00000543545	KRTAP10-2	P60368	255 aa		6.64	□□□□□ -1.35
CPSF7-221	ENST00000543545	LINC01545	Q5VT33	79 aa		6.64	□□□□□ -1.35
CPSF7-221	ENST00000543545	CAMK2N2	Q96S95	79 aa		6.64	□□□□□ -1.35
CPSF7-221	ENST00000543545		A0A1B0GVY2	172 aa		6.63	□□□□□ -1.35
CPSF7-221	ENST00000543545	CKS1B	P61024	79 aa		6.63	□□□□□ -1.35
CPSF7-221	ENST00000543545	HERVK_113	P61574	105 aa		6.63	□□□□□ -1.35
CPSF7-221	ENST00000543545	SYCN	Q0VAF6	134 aa		6.63	□□□□□ -1.35
CPSF7-221	ENST00000543545	COX7B2	Q8TF08	81 aa		6.63	□□□□□ -1.35
CPSF7-221	ENST00000543545	FAT2	Q9NYQ8	4349 aa		6.63	□□□□□ -1.35
CPSF7-221	ENST00000543545	TMEM223	A0PJW6	202 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	C16orf90	A8MZG2	172 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	NDUFA1	O15239	70 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	SCGB1D1	O95968	90 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	CDPF1	Q6NVV7	123 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545		Q8IZM0	81 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	C2orf48	Q96LS8	159 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	CARD19	Q96LW7	228 aa		6.62	□□□□□ -1.35
CPSF7-221	ENST00000543545	DNAH11	Q96DT5	4516 aa		6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	SLPI	P03973	132 aa		6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	GCSH	P23434	173 aa		6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	AKR1D1	P51857	326 aa		6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	CNBP	P62633	177 aa	Known RBP	6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	KIAA0087	Q14695	138 aa		6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	C2orf82	Q6UX34	121 aa		6.61	□□□□□ -1.35
CPSF7-221	ENST00000543545	IGLV5-39	A0A0G2JS06	123 aa		6.6	□□□□□ -1.35

Retrieved 100 of 20,778 RNA–protein pairs in 76 ms