RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 GAGE2EQ4V326 116 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 LINC00242Q5T6M2 205 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 GAGE2DQ9UEU5 116 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 NBEAL2Q6ZNJ1 2754 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 H3BT86 120 aa8.93□□□□□ -0.98
RNF4-222ENST00000541204 KRTAP10-3P60369 221 aa8.93□□□□□ -0.98
RNF4-222ENST00000541204 CIRBPQ14011 172 aaKnown RBP8.93□□□□□ -0.98
RNF4-222ENST00000541204 NOP10Q9NPE3 64 aaKnown RBP8.93□□□□□ -0.98
RNF4-222ENST00000541204 LINC00308Q8TCZ7 52 aa8.92□□□□□ -0.98
RNF4-222ENST00000541204 TENM1Q9UKZ4 2725 aa8.92□□□□□ -0.98
RNF4-222ENST00000541204 TRAV13-1A0A0B4J241 112 aa8.92□□□□□ -0.98
RNF4-222ENST00000541204 HERVK_113P63121 156 aa8.92□□□□□ -0.98
RNF4-222ENST00000541204 IGLV5-39A0A0G2JS06 123 aa8.91□□□□□ -0.98
RNF4-222ENST00000541204 IGLV1-51P01701 117 aa8.91□□□□□ -0.98
RNF4-222ENST00000541204 GIG44P09565 113 aaPredicted RBP8.91□□□□□ -0.98
RNF4-222ENST00000541204 C15orf53Q8NAA6 179 aa8.91□□□□□ -0.98
RNF4-222ENST00000541204 INAFM1C9JVW0 142 aa8.91□□□□□ -0.98
RNF4-222ENST00000541204 NHLRC4P0CG21 123 aaPredicted RBP8.91□□□□□ -0.98
RNF4-222ENST00000541204 PF4P02776 101 aa8.9□□□□□ -0.98
RNF4-222ENST00000541204 NTM-AS1Q6ZSK4 140 aa8.9□□□□□ -0.98
RNF4-222ENST00000541204 NSD1Q96L73 2696 aaPredicted RBP8.9□□□□□ -0.98
RNF4-222ENST00000541204 SMIM1B2RUZ4 78 aa8.9□□□□□ -0.98
RNF4-222ENST00000541204 NDUFV3P56181 108 aaKnown RBP8.9□□□□□ -0.99
RNF4-222ENST00000541204 SOSTDC1Q6X4U4 206 aa8.9□□□□□ -0.99
RNF4-222ENST00000541204 GAGE7O76087 117 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 GAGE12FP0CL80 117 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 GAGE12GP0CL81 117 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 GAGE12IP0CL82 117 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 TTC32Q5I0X7 151 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 HIVEP1P15822 2718 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 RPL36AP83881 106 aaKnown RBP8.89□□□□□ -0.99
RNF4-222ENST00000541204 IL17DQ8TAD2 202 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 RPL36ALQ969Q0 106 aaKnown RBP8.89□□□□□ -0.99
RNF4-222ENST00000541204 C19orf73Q9NVV2 129 aa8.89□□□□□ -0.99
RNF4-222ENST00000541204 K7EQD1 137 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 MEIG1Q5JSS6 88 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 PRIMA1Q86XR5 153 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 SPATA3Q8NHX4 192 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 TRGV2A0A075B6R0 118 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 GAGE12JA6NER3 117 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 GAGE4Q13068 117 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 GAGE5Q13069 117 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 ATRQ13535 2644 aa8.88□□□□□ -0.99
RNF4-222ENST00000541204 CDC42SE2Q9NRR3 84 aa8.87□□□□□ -0.99
RNF4-222ENST00000541204 FAM19A3Q7Z5A8 133 aa8.86□□□□□ -0.99
RNF4-222ENST00000541204 GAGE6Q13070 117 aa8.86□□□□□ -0.99
RNF4-222ENST00000541204 DAZ2Q13117 558 aaKnown RBP8.86□□□□□ -0.99
RNF4-222ENST00000541204 DEFB121Q5J5C9 76 aa8.86□□□□□ -0.99
RNF4-222ENST00000541204 Q6Q795 121 aa8.86□□□□□ -0.99
RNF4-222ENST00000541204 DAZ4Q86SG3 579 aaKnown RBP8.86□□□□□ -0.99
RNF4-222ENST00000541204 DAZ3Q9NR90 486 aaKnown RBP8.86□□□□□ -0.99
RNF4-222ENST00000541204 CSDC2Q9Y534 153 aaKnown RBP8.86□□□□□ -0.99
RNF4-222ENST00000541204 LOC100131303A0A0U1RQF7 123 aa8.85□□□□□ -0.99
RNF4-222ENST00000541204 F5H768 121 aa8.85□□□□□ -0.99
RNF4-222ENST00000541204 COX7A2LO14548 114 aa8.85□□□□□ -0.99
RNF4-222ENST00000541204 TRBV10-1A0A0K0K1A3 114 aa8.85□□□□□ -0.99
RNF4-222ENST00000541204 B5MCH6 92 aa8.85□□□□□ -0.99
RNF4-222ENST00000541204 SHISA2Q6UWI4 295 aa8.84□□□□□ -0.99
RNF4-222ENST00000541204 SS18L2Q9UHA2 77 aa8.84□□□□□ -0.99
RNF4-222ENST00000541204 PLAC8L1A1L4L8 177 aa8.84□□□□□ -0.99
RNF4-222ENST00000541204 FAM240AA0A1B0GVK7 77 aa8.84□□□□□ -1
RNF4-222ENST00000541204 CCDC179H3BU77 68 aa8.83□□□□□ -1
RNF4-222ENST00000541204 UBE2L6O14933 153 aa8.83□□□□□ -1
RNF4-222ENST00000541204 CMC4P56277 68 aaPredicted RBP8.83□□□□□ -1
RNF4-222ENST00000541204 CSNK1G2-AS1Q8NCQ2 148 aa8.83□□□□□ -1
RNF4-222ENST00000541204 COPS9Q8WXC6 57 aa8.83□□□□□ -1
RNF4-222ENST00000541204 FLNBO75369 2602 aaKnown RBP8.83□□□□□ -1
RNF4-222ENST00000541204 LINC00482Q8N8I6 264 aa8.83□□□□□ -1
RNF4-222ENST00000541204 C16orf74Q96GX8 76 aa8.83□□□□□ -1
RNF4-222ENST00000541204 DEFB130BP0DP73 79 aa8.82□□□□□ -1
RNF4-222ENST00000541204 DEFB130AP0DP74 79 aa8.82□□□□□ -1
RNF4-222ENST00000541204 TRGV4A0A0C4DH28 118 aa8.81□□□□□ -1
RNF4-222ENST00000541204 HERV-K104P63124 156 aa8.81□□□□□ -1
RNF4-222ENST00000541204 MRPL23Q16540 153 aaKnown RBP8.81□□□□□ -1
RNF4-222ENST00000541204 TMEM243Q9BU79 118 aa8.81□□□□□ -1
RNF4-222ENST00000541204 IGKV3OR2-268A0A0C4DH90 116 aa8.81□□□□□ -1
RNF4-222ENST00000541204 FAM218AQ96MZ4 157 aa8.81□□□□□ -1
RNF4-222ENST00000541204 TRRAPQ9Y4A5 3859 aa8.8□□□□□ -1
RNF4-222ENST00000541204 TOMM7Q9P0U1 55 aa8.79□□□□□ -1
RNF4-222ENST00000541204 BAALC-AS2P0C853 105 aa8.79□□□□□ -1
RNF4-222ENST00000541204 SVIPQ8NHG7 77 aa8.79□□□□□ -1
RNF4-222ENST00000541204 FAM110AQ9BQ89 295 aa8.79□□□□□ -1
RNF4-222ENST00000541204 TEP1Q99973 2627 aaKnown RBP8.79□□□□□ -1
RNF4-222ENST00000541204 DEFB4AO15263 64 aa8.78□□□□□ -1
RNF4-222ENST00000541204 TRACP01848 142 aa8.78□□□□□ -1
RNF4-222ENST00000541204 MIR7-3HGQ8N6C7 128 aa8.78□□□□□ -1
RNF4-222ENST00000541204 COX7B2Q8TF08 81 aa8.78□□□□□ -1
RNF4-222ENST00000541204 CHCHD5Q9BSY4 110 aa8.78□□□□□ -1
RNF4-222ENST00000541204 Q9HAA7 133 aa8.78□□□□□ -1
RNF4-222ENST00000541204 SMCR5Q8TEV8 140 aa8.77□□□□□ -1.01
RNF4-222ENST00000541204 C22orf24Q9Y442 160 aa8.77□□□□□ -1.01
RNF4-222ENST00000541204 TRBV7-7A0A0K0K1E9 115 aa8.77□□□□□ -1.01
RNF4-222ENST00000541204 LINC00337Q8N6G1 96 aa8.77□□□□□ -1.01
RNF4-222ENST00000541204 IGLV4-60A0A075B6I1 120 aa8.76□□□□□ -1.01
RNF4-222ENST00000541204 IGKV2-28A0A075B6P5 120 aa8.76□□□□□ -1.01
RNF4-222ENST00000541204 IGKV2D-28P01615 120 aa8.76□□□□□ -1.01
RNF4-222ENST00000541204 CRPP02741 224 aa8.76□□□□□ -1.01
RNF4-222ENST00000541204 ACYP1P07311 99 aa8.76□□□□□ -1.01
RNF4-222ENST00000541204 TRAV13-2A0A0B4J235 113 aa8.75□□□□□ -1.01
RNF4-222ENST00000541204 TRBV6-4A0A1B0GX49 114 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms