RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 MRPL23Q16540 153 aaKnown RBP9.72□□□□□ -0.85
RTN3-210ENST00000540798 CDC42SE2Q9NRR3 84 aa9.72□□□□□ -0.85
RTN3-210ENST00000540798 TENM1Q9UKZ4 2725 aa9.72□□□□□ -0.85
RTN3-210ENST00000540798 DGAT2L7PQ6IED9 249 aa9.72□□□□□ -0.85
RTN3-210ENST00000540798 LOC107984640A0A0U1RRK4 108 aa9.71□□□□□ -0.85
RTN3-210ENST00000540798 NDUFV3P56181 108 aaKnown RBP9.71□□□□□ -0.85
RTN3-210ENST00000540798 LINC00242Q5T6M2 205 aa9.71□□□□□ -0.85
RTN3-210ENST00000540798 TRGV4A0A0C4DH28 118 aa9.71□□□□□ -0.85
RTN3-210ENST00000540798 CDKN2A-AS1Q9UH64 79 aa9.71□□□□□ -0.85
RTN3-210ENST00000540798 NOTCH3Q9UM47 2321 aa9.71□□□□□ -0.85
RTN3-210ENST00000540798 A4D1N5 150 aa9.71□□□□□ -0.86
RTN3-210ENST00000540798 CFC1BP0CG36 223 aa9.71□□□□□ -0.86
RTN3-210ENST00000540798 CFC1P0CG37 223 aa9.71□□□□□ -0.86
RTN3-210ENST00000540798 HERVK_113P63121 156 aa9.71□□□□□ -0.86
RTN3-210ENST00000540798 COX6A2Q02221 97 aa9.71□□□□□ -0.86
RTN3-210ENST00000540798 TMEM243Q9BU79 118 aa9.71□□□□□ -0.86
RTN3-210ENST00000540798 IGLV5-39A0A0G2JS06 123 aa9.7□□□□□ -0.86
RTN3-210ENST00000540798 WIPF1O43516 503 aa9.7□□□□□ -0.86
RTN3-210ENST00000540798 MEIG1Q5JSS6 88 aa9.69□□□□□ -0.86
RTN3-210ENST00000540798 WFDC9Q8NEX5 89 aa9.69□□□□□ -0.86
RTN3-210ENST00000540798 NDUFA12Q9UI09 145 aa9.69□□□□□ -0.86
RTN3-210ENST00000540798 TMEM101Q96IK0 257 aa9.69□□□□□ -0.86
RTN3-210ENST00000540798 SPANXDQ9BXN6 97 aa9.69□□□□□ -0.86
RTN3-210ENST00000540798 SPANXCQ9NY87 97 aa9.69□□□□□ -0.86
RTN3-210ENST00000540798 EIF4EBP3O60516 100 aaPredicted RBP9.68□□□□□ -0.86
RTN3-210ENST00000540798 A8MZ25 164 aa9.68□□□□□ -0.86
RTN3-210ENST00000540798 MUSTN1Q8IVN3 82 aa9.67□□□□□ -0.86
RTN3-210ENST00000540798 NDUFA1O15239 70 aa9.67□□□□□ -0.86
RTN3-210ENST00000540798 TIMM17BO60830 172 aa9.67□□□□□ -0.86
RTN3-210ENST00000540798 TRBV6-8A0A0A6YYG3 113 aa9.67□□□□□ -0.86
RTN3-210ENST00000540798 PSMB2P49721 201 aa9.67□□□□□ -0.86
RTN3-210ENST00000540798 A0A0B4J2C4 111 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 F5H768 121 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 UBE2L6O14933 153 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 GAGE2BQ13066 116 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 GAGE2EQ4V326 116 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 TTC32Q5I0X7 151 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 ADAMTSL4-AS1Q5T5F5 129 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 GAGE2DQ9UEU5 116 aa9.66□□□□□ -0.86
RTN3-210ENST00000540798 LOC107984156A0A0G2JMH3 177 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 LYRM9A8MSI8 78 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 SMIM1B2RUZ4 78 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 ARL17AQ8IVW1 177 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 DEFB130BP0DP73 79 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 DEFB130AP0DP74 79 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 PRO1854Q9UHT4 67 aa9.65□□□□□ -0.86
RTN3-210ENST00000540798 APOC4P55056 127 aa9.65□□□□□ -0.87
RTN3-210ENST00000540798 MIAQ16674 131 aa9.65□□□□□ -0.87
RTN3-210ENST00000540798 TRAV13-1A0A0B4J241 112 aa9.64□□□□□ -0.87
RTN3-210ENST00000540798 C5orf47Q569G3 176 aa9.64□□□□□ -0.87
RTN3-210ENST00000540798 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.63□□□□□ -0.87
RTN3-210ENST00000540798 IFITM1P13164 125 aa9.63□□□□□ -0.87
RTN3-210ENST00000540798 FAM222AQ5U5X8 452 aa9.62□□□□□ -0.87
RTN3-210ENST00000540798 IGHV3-33P01772 117 aa9.62□□□□□ -0.87
RTN3-210ENST00000540798 DEFB135Q30KP9 77 aa9.62□□□□□ -0.87
RTN3-210ENST00000540798 PRO0255Q9UI72 69 aa9.62□□□□□ -0.87
RTN3-210ENST00000540798 TRRAPQ9Y4A5 3859 aa9.62□□□□□ -0.87
RTN3-210ENST00000540798 ZNF625Q96I27 306 aaPredicted RBP9.61□□□□□ -0.87
RTN3-210ENST00000540798 IGLV4-60A0A075B6I1 120 aa9.61□□□□□ -0.87
RTN3-210ENST00000540798 PPDPFLQ8WWR9 84 aa9.61□□□□□ -0.87
RTN3-210ENST00000540798 SNCGO76070 127 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 GYPEP15421 78 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 ATP6V0E2Q8NHE4 81 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 IGHV4-28A0A0C4DH34 117 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 LYRM7Q5U5X0 104 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 ANKRD29Q8N6D5 301 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 Q8NAQ8 132 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 CHCHD5Q9BSY4 110 aa9.6□□□□□ -0.87
RTN3-210ENST00000540798 Q9H8V8 135 aa9.59□□□□□ -0.87
RTN3-210ENST00000540798 KLK5Q9Y337 293 aaPredicted RBP9.59□□□□□ -0.87
RTN3-210ENST00000540798 MIFP14174 115 aa9.58□□□□□ -0.88
RTN3-210ENST00000540798 TEN1Q86WV5 123 aa9.58□□□□□ -0.88
RTN3-210ENST00000540798 ATRQ13535 2644 aa9.58□□□□□ -0.88
RTN3-210ENST00000540798 CMYA5Q8N3K9 4069 aa9.58□□□□□ -0.88
RTN3-210ENST00000540798 A0A1B0GUV1 79 aa9.58□□□□□ -0.88
RTN3-210ENST00000540798 TCL1BO95988 128 aa9.57□□□□□ -0.88
RTN3-210ENST00000540798 IGHV4-30-4P0DP06 118 aa9.57□□□□□ -0.88
RTN3-210ENST00000540798 IGHV3OR16-9A0A0B4J2B5 98 aa9.56□□□□□ -0.88
RTN3-210ENST00000540798 PRSS2P07478 247 aa9.56□□□□□ -0.88
RTN3-210ENST00000540798 NBEAL2Q6ZNJ1 2754 aa9.56□□□□□ -0.88
RTN3-210ENST00000540798 PAX4O43316 350 aa9.56□□□□□ -0.88
RTN3-210ENST00000540798 CIRBPQ14011 172 aaKnown RBP9.56□□□□□ -0.88
RTN3-210ENST00000540798 CELA1Q9UNI1 258 aa9.55□□□□□ -0.88
RTN3-210ENST00000540798 DEFB4AO15263 64 aa9.55□□□□□ -0.88
RTN3-210ENST00000540798 FAM19A5Q7Z5A7 132 aaPredicted RBP9.55□□□□□ -0.88
RTN3-210ENST00000540798 TRBV30A0A0K0K1B3 111 aa9.54□□□□□ -0.88
RTN3-210ENST00000540798 LINC00308Q8TCZ7 52 aa9.54□□□□□ -0.88
RTN3-210ENST00000540798 A0A087WZ39 114 aa9.54□□□□□ -0.88
RTN3-210ENST00000540798 LINC00959A0A1B0GUT2 108 aa9.54□□□□□ -0.88
RTN3-210ENST00000540798 DAD1P61803 113 aa9.53□□□□□ -0.88
RTN3-210ENST00000540798 DAND5Q8N907 189 aa9.53□□□□□ -0.88
RTN3-210ENST00000540798 PRIMA1Q86XR5 153 aa9.53□□□□□ -0.88
RTN3-210ENST00000540798 COX7B2Q8TF08 81 aa9.53□□□□□ -0.88
RTN3-210ENST00000540798 NPC2P61916 151 aa9.52□□□□□ -0.89
RTN3-210ENST00000540798 KRTAP24-1Q3LI83 254 aa9.52□□□□□ -0.89
RTN3-210ENST00000540798 C15orf53Q8NAA6 179 aa9.52□□□□□ -0.89
RTN3-210ENST00000540798 DNAH3Q8TD57 4116 aa9.52□□□□□ -0.89
RTN3-210ENST00000540798 ATP5G1P05496 136 aa9.52□□□□□ -0.89
RTN3-210ENST00000540798 SOSTDC1Q6X4U4 206 aa9.51□□□□□ -0.89
RTN3-210ENST00000540798 TMEM262E9PQX1 116 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms