RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, human

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-209	ENST00000540747	STPG4	Q8N801	248 aa		4.66	□□□□□ -1.66
YBX3-209	ENST00000540747	C1orf43	Q9BWL3	253 aa		4.66	□□□□□ -1.66
YBX3-209	ENST00000540747		A0A087WX48	190 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	SMKR1	H3BMG3	65 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747		H3BVH4	76 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	NPY	P01303	97 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	ASIP	P42127	132 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	MPV17L2	Q567V2	206 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	ORAOV1	Q8WV07	137 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	IFI27L1	Q96BM0	104 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	NXT2	Q9NPJ8	142 aa	Known RBP	4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	PRR34	Q9NV39	138 aa		4.65	□□□□□ -1.67
YBX3-209	ENST00000540747	TRBV7-3	A0A075B6L6	115 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747		A0A087WWL8	130 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	TRBV6-8	A0A0A6YYG3	113 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	TNFRSF6B	O95407	300 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	NCR2	O95944	276 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	COX8A	P10176	69 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	S100A4	P26447	101 aa	Known RBP	4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	FCER1G	P30273	86 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	CNBP	P62633	177 aa	Known RBP	4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	SPANXN1	Q5VSR9	72 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747		Q8N8P6	123 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	RNF185	Q96GF1	192 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	CNFN	Q9BYD5	112 aa		4.64	□□□□□ -1.67
YBX3-209	ENST00000540747	PTTG1IP	P53801	180 aa		4.63	□□□□□ -1.67
YBX3-209	ENST00000540747	RPL36A	P83881	106 aa	Known RBP	4.63	□□□□□ -1.67
YBX3-209	ENST00000540747	MIA	Q16674	131 aa		4.63	□□□□□ -1.67
YBX3-209	ENST00000540747	FAM74A4	Q5TZK3	123 aa		4.63	□□□□□ -1.67
YBX3-209	ENST00000540747	RPL36AL	Q969Q0	106 aa	Known RBP	4.63	□□□□□ -1.67
YBX3-209	ENST00000540747	LINC01546	A6NGU7	62 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	ATP5L	O75964	103 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	CRP	P02741	224 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	SLPI	P03973	132 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	ODF1	Q14990	250 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	VAMP3	Q15836	100 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	NTM-AS1	Q6ZSK4	140 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	NEXN-AS1	Q8NBZ9	246 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	SPACA4	Q8TDM5	124 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	MRAP2	Q96G30	205 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	LINC01600	Q96MT4	127 aa		4.62	□□□□□ -1.67
YBX3-209	ENST00000540747	LPA	P08519	4548 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747		A0A087WYN8	130 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747		A0A096LNJ9	63 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	PRSS47	A8MTI9	375 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	SNAI2	O43623	268 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	PPP1R17	O96001	155 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	ANG	P03950	147 aa	Known RBP	4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	NPS	P0C0P6	89 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	RBX1	P62877	108 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	UBE2V1	Q13404	147 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	TMEM97	Q5BJF2	176 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	BVES-AS1	Q5T3Y7	98 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	AP1S3	Q96PC3	154 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	PLAC8	Q9NZF1	115 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747	PHLDA3	Q9Y5J5	127 aa		4.61	□□□□□ -1.67
YBX3-209	ENST00000540747		A6NDN8	102 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	TMEM262	E9PQX1	116 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747		M0R381	172 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	CHTF8	P0CG12	524 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	SMIM17	P0DL12	118 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	KRTAP10-8	P60410	259 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	SEC11A	P67812	179 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	ANKRD39	Q53RE8	183 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	DPH3P1	Q9H4G8	78 aa		4.6	□□□□□ -1.67
YBX3-209	ENST00000540747	TAX1BP3	O14907	124 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	DPM2	O94777	84 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	IGKC	P01834	107 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	MGP	P08493	103 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	NMU	P48645	174 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	HSD52	Q0P140	79 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	ORMDL2	Q53FV1	153 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	BOD1L2	Q8IYS8	172 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	LINC00269	Q8N2A0	174 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	C20orf78	Q9BR46	151 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	CHCHD5	Q9BSY4	110 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	KIF25-AS1	Q9Y6Z4	181 aa		4.59	□□□□□ -1.67
YBX3-209	ENST00000540747	IGHV3-64	A0A075B6Q5	118 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747		A0A0J9YXV3	536 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.58	□□□□□ -1.68
YBX3-209	ENST00000540747		K7EMI3	77 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	GAS8-AS1	O95177	125 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	PRR3	P79522	188 aa	Known RBP	4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	CLPSL2	Q6UWE3	100 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	C2orf91	Q6ZV80	131 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747		Q6ZVH6	145 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	NRAC	Q8N912	160 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	C20orf203	Q8NBC4	194 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	SCGB3A1	Q96QR1	104 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	SMIM2	Q9BVW6	85 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	MUC2	Q02817	5179 aa		4.58	□□□□□ -1.68
YBX3-209	ENST00000540747	FAT4	Q6V0I7	4981 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747	TRAV26-2	A0A0B4J265	109 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747	LINC01549	A6NIU2	74 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747		H3BRM9	83 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747		H7C1H1	209 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747	CCL25	O15444	150 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747	FGF6	P10767	208 aa		4.57	□□□□□ -1.68
YBX3-209	ENST00000540747	SUMO2	P61956	95 aa	Known RBP	4.57	□□□□□ -1.68
YBX3-209	ENST00000540747	REG3A	Q06141	175 aa		4.57	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms