RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 CYSTM1Q9H1C7 97 aa6.43□□□□□ -1.38
SNHG1-209ENST00000538654 EP300Q09472 2414 aaPredicted RBP6.43□□□□□ -1.38
SNHG1-209ENST00000538654 LINC00337Q8N6G1 96 aa6.43□□□□□ -1.38
SNHG1-209ENST00000538654 SMIM11BQ8TCY0 68 aa6.43□□□□□ -1.38
SNHG1-209ENST00000538654 A0A087WYN8 130 aa6.42□□□□□ -1.38
SNHG1-209ENST00000538654 A0A1W2PPR1 153 aa6.42□□□□□ -1.38
SNHG1-209ENST00000538654 IGHV4-38-2P0DP08 117 aa6.42□□□□□ -1.38
SNHG1-209ENST00000538654 BDP1A6H8Y1 2624 aa6.42□□□□□ -1.38
SNHG1-209ENST00000538654 IGKV2-28A0A075B6P5 120 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 TRBV10-1A0A0K0K1A3 114 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 IGKV2D-28P01615 120 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 RPL36AP83881 106 aaKnown RBP6.41□□□□□ -1.38
SNHG1-209ENST00000538654 MIR7-3HGQ8N6C7 128 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 C11orf72Q8NBR9 251 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 RPL36ALQ969Q0 106 aaKnown RBP6.41□□□□□ -1.38
SNHG1-209ENST00000538654 DSCR8Q96T75 97 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 CDC42SE2Q9NRR3 84 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 SPTBN1Q01082 2364 aaKnown RBP6.41□□□□□ -1.38
SNHG1-209ENST00000538654 C8orf87E5RJ46 101 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 CCKP06307 115 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 DEFB131AP59861 70 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 REG3AQ06141 175 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 COX7B2Q8TF08 81 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 ORMDL1Q9P0S3 153 aa6.41□□□□□ -1.38
SNHG1-209ENST00000538654 A0A087WVE0 104 aa6.4□□□□□ -1.38
SNHG1-209ENST00000538654 JMJD7-PLA2G4BH0Y9G9 81 aa6.4□□□□□ -1.38
SNHG1-209ENST00000538654 LECT2O14960 151 aa6.4□□□□□ -1.38
SNHG1-209ENST00000538654 INSP01308 110 aa6.4□□□□□ -1.38
SNHG1-209ENST00000538654 HRNRQ86YZ3 2850 aaPredicted RBP6.4□□□□□ -1.39
SNHG1-209ENST00000538654 DMXL1Q9Y485 3027 aa6.39□□□□□ -1.39
SNHG1-209ENST00000538654 UBE2L6O14933 153 aa6.39□□□□□ -1.39
SNHG1-209ENST00000538654 LINC00158P58513 81 aa6.39□□□□□ -1.39
SNHG1-209ENST00000538654 C9orf129Q5T035 196 aaKnown RBP6.39□□□□□ -1.39
SNHG1-209ENST00000538654 TRBV10-3A0A0K0K1G6 114 aa6.39□□□□□ -1.39
SNHG1-209ENST00000538654 IBA57-AS1B1ANH7 110 aa6.39□□□□□ -1.39
SNHG1-209ENST00000538654 NCR3O14931 201 aa6.39□□□□□ -1.39
SNHG1-209ENST00000538654 PAX4O43316 350 aa6.38□□□□□ -1.39
SNHG1-209ENST00000538654 Q5XG85 94 aa6.38□□□□□ -1.39
SNHG1-209ENST00000538654 COL6A6A6NMZ7 2263 aa6.38□□□□□ -1.39
SNHG1-209ENST00000538654 K7EQD1 137 aa6.38□□□□□ -1.39
SNHG1-209ENST00000538654 BCE1O60756 84 aa6.38□□□□□ -1.39
SNHG1-209ENST00000538654 PRM2P04554 102 aa6.38□□□□□ -1.39
SNHG1-209ENST00000538654 A0A087WZ39 114 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 CCL18P55774 89 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 TMEM243Q9BU79 118 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 BSNQ9UPA5 3926 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 IGHV4-61A0A0C4DH41 118 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 FHL2Q14192 279 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 NTM-AS1Q6ZSK4 140 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 ATMQ13315 3056 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 AKAP13Q12802 2813 aa6.37□□□□□ -1.39
SNHG1-209ENST00000538654 Q6ZVQ6 151 aa6.36□□□□□ -1.39
SNHG1-209ENST00000538654 PTPRZ1P23471 2315 aaPredicted RBP6.36□□□□□ -1.39
SNHG1-209ENST00000538654 LY6G6DO95868 133 aa6.36□□□□□ -1.39
SNHG1-209ENST00000538654 LYPD5Q6UWN5 251 aa6.36□□□□□ -1.39
SNHG1-209ENST00000538654 LINC00167Q96N53 147 aa6.36□□□□□ -1.39
SNHG1-209ENST00000538654 TOMM7Q9P0U1 55 aa6.36□□□□□ -1.39
SNHG1-209ENST00000538654 ABCA2Q9BZC7 2435 aa6.36□□□□□ -1.39
SNHG1-209ENST00000538654 TRBV6-4A0A1B0GX49 114 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 TMEM256-PLSCR3K7ERE1 68 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 MSMBP08118 114 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 GVINP1Q7Z2Y8 2422 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 C10orf99Q6UWK7 81 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 UBL5Q9BZL1 73 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 RBM12B-AS1Q9P1G2 102 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 TLN1Q9Y490 2541 aaKnown RBP6.35□□□□□ -1.39
SNHG1-209ENST00000538654 TRGV1A0A0A0MS02 117 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 PLAC8L1A1L4L8 177 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 C10orf105Q8TEF2 133 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 SERP1Q9Y6X1 66 aa6.35□□□□□ -1.39
SNHG1-209ENST00000538654 TRAV23DV6A0A075B6W5 121 aa6.34□□□□□ -1.39
SNHG1-209ENST00000538654 MAP6D1Q9H9H5 199 aa6.34□□□□□ -1.39
SNHG1-209ENST00000538654 SORL1Q92673 2214 aa6.34□□□□□ -1.39
SNHG1-209ENST00000538654 LYRM9A8MSI8 78 aa6.34□□□□□ -1.4
SNHG1-209ENST00000538654 SLPIP03973 132 aa6.34□□□□□ -1.4
SNHG1-209ENST00000538654 SS18Q15532 418 aa6.34□□□□□ -1.4
SNHG1-209ENST00000538654 IGHV4-59P01825 116 aa6.33□□□□□ -1.4
SNHG1-209ENST00000538654 XCL1P47992 114 aa6.33□□□□□ -1.4
SNHG1-209ENST00000538654 C20orf197Q8N268 126 aa6.33□□□□□ -1.4
SNHG1-209ENST00000538654 XCL2Q9UBD3 114 aa6.33□□□□□ -1.4
SNHG1-209ENST00000538654 TRAV7A0A075B6U4 112 aa6.32□□□□□ -1.4
SNHG1-209ENST00000538654 ODF3L2Q3SX64 289 aa6.32□□□□□ -1.4
SNHG1-209ENST00000538654 ENHOQ6UWT2 76 aa6.32□□□□□ -1.4
SNHG1-209ENST00000538654 EPM2AB3EWF7 344 aa6.32□□□□□ -1.4
SNHG1-209ENST00000538654 PFN2P35080 140 aa6.32□□□□□ -1.4
SNHG1-209ENST00000538654 Q8N814 137 aa6.32□□□□□ -1.4
SNHG1-209ENST00000538654 IGHV3OR16-9A0A0B4J2B5 98 aa6.31□□□□□ -1.4
SNHG1-209ENST00000538654 B4DSR2 109 aa6.31□□□□□ -1.4
SNHG1-209ENST00000538654 DYNLRB2Q8TF09 96 aa6.31□□□□□ -1.4
SNHG1-209ENST00000538654 SPTAN1Q13813 2472 aaKnown RBP6.31□□□□□ -1.4
SNHG1-209ENST00000538654 LAMA5O15230 3695 aa6.31□□□□□ -1.4
SNHG1-209ENST00000538654 SLURP1P55000 103 aa6.3□□□□□ -1.4
SNHG1-209ENST00000538654 DEFB112Q30KQ8 113 aa6.3□□□□□ -1.4
SNHG1-209ENST00000538654 CCL19Q99731 98 aa6.3□□□□□ -1.4
SNHG1-209ENST00000538654 ZNF292O60281 2723 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 KLKP1Q107X0 134 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 Q6ZTI0 123 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 C1orf158Q8N1D5 194 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 WFDC9Q8NEX5 89 aa6.29□□□□□ -1.4
SNHG1-209ENST00000538654 WFDC11Q8NEX6 87 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms