RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 HIST1H4AP62805 103 aaKnown RBP10.16□□□□□ -0.78
LIG1-203ENST00000536218 TMEM89A2RUT3 159 aa10.15□□□□□ -0.78
LIG1-203ENST00000536218 Q8N2B8 174 aa10.15□□□□□ -0.78
LIG1-203ENST00000536218 A0A1W2PRX2 142 aa10.15□□□□□ -0.78
LIG1-203ENST00000536218 INAFM2P0DMQ5 153 aa10.15□□□□□ -0.78
LIG1-203ENST00000536218 SPINK13Q1W4C9 94 aa10.15□□□□□ -0.78
LIG1-203ENST00000536218 HTN1P15515 57 aa10.14□□□□□ -0.79
LIG1-203ENST00000536218 USP17L23D6RBM5 183 aa10.14□□□□□ -0.79
LIG1-203ENST00000536218 J3QKU1 62 aa10.14□□□□□ -0.79
LIG1-203ENST00000536218 PFN2P35080 140 aa10.14□□□□□ -0.79
LIG1-203ENST00000536218 K7EQG2 157 aa10.13□□□□□ -0.79
LIG1-203ENST00000536218 PLA2G2AP14555 144 aa10.13□□□□□ -0.79
LIG1-203ENST00000536218 UPK3BQ9BT76 320 aa10.13□□□□□ -0.79
LIG1-203ENST00000536218 UNC79Q9P2D8 2635 aa10.13□□□□□ -0.79
LIG1-203ENST00000536218 VSIG2Q96IQ7 327 aa10.13□□□□□ -0.79
LIG1-203ENST00000536218 C14orf132Q9NPU4 83 aa10.13□□□□□ -0.79
LIG1-203ENST00000536218 RPL35AP18077 110 aaKnown RBP10.12□□□□□ -0.79
LIG1-203ENST00000536218 LINC00336Q6ZUF6 198 aa10.12□□□□□ -0.79
LIG1-203ENST00000536218 KNCNA6PVL3 124 aa10.12□□□□□ -0.79
LIG1-203ENST00000536218 MED14OSP0DP75 135 aa10.12□□□□□ -0.79
LIG1-203ENST00000536218 FHL2Q14192 279 aa10.12□□□□□ -0.79
LIG1-203ENST00000536218 FAM218AQ96MZ4 157 aa10.12□□□□□ -0.79
LIG1-203ENST00000536218 DNAJC9-AS1A6NH13 148 aa10.11□□□□□ -0.79
LIG1-203ENST00000536218 KLLNB2CW77 178 aa10.11□□□□□ -0.79
LIG1-203ENST00000536218 CIRBPQ14011 172 aaKnown RBP10.11□□□□□ -0.79
LIG1-203ENST00000536218 M0QY20 66 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 DEFB131AP59861 70 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 MALP21145 153 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 PRIMA1Q86XR5 153 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 ESM1Q9NQ30 184 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 PDZD2O15018 2839 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 IGHV3-73A0A0B4J1V6 119 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 LINC01561Q8N1V8 128 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 LINC00308Q8TCZ7 52 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 PRO0628Q9UI54 55 aa10.1□□□□□ -0.79
LIG1-203ENST00000536218 TRBV6-5A0A0K0K1A5 114 aa10.09□□□□□ -0.79
LIG1-203ENST00000536218 TINCRA0A1B0GVN0 87 aa10.09□□□□□ -0.79
LIG1-203ENST00000536218 LINC00846Q9NV44 126 aa10.09□□□□□ -0.79
LIG1-203ENST00000536218 C22orf24Q9Y442 160 aa10.09□□□□□ -0.79
LIG1-203ENST00000536218 TMEM243Q9BU79 118 aa10.09□□□□□ -0.79
LIG1-203ENST00000536218 HIVEP2P31629 2446 aa10.08□□□□□ -0.8
LIG1-203ENST00000536218 PRM2P04554 102 aa10.08□□□□□ -0.8
LIG1-203ENST00000536218 MRPS36P82909 103 aaKnown RBP10.08□□□□□ -0.8
LIG1-203ENST00000536218 APRG1Q8IVJ8 170 aa10.08□□□□□ -0.8
LIG1-203ENST00000536218 DYNLRB2Q8TF09 96 aa10.08□□□□□ -0.8
LIG1-203ENST00000536218 JMJD1CQ15652 2540 aa10.08□□□□□ -0.8
LIG1-203ENST00000536218 C9orf129Q5T035 196 aaKnown RBP10.07□□□□□ -0.8
LIG1-203ENST00000536218 C20orf197Q8N268 126 aa10.07□□□□□ -0.8
LIG1-203ENST00000536218 Q9H8V8 135 aa10.07□□□□□ -0.8
LIG1-203ENST00000536218 GCN1Q92616 2671 aaKnown RBP10.07□□□□□ -0.8
LIG1-203ENST00000536218 HILS1P60008 231 aa10.07□□□□□ -0.8
LIG1-203ENST00000536218 WFDC9Q8NEX5 89 aa10.07□□□□□ -0.8
LIG1-203ENST00000536218 TRAV23DV6A0A075B6W5 121 aa10.06□□□□□ -0.8
LIG1-203ENST00000536218 BEAN1Q3B7T3 259 aa10.06□□□□□ -0.8
LIG1-203ENST00000536218 SMR3AQ99954 134 aa10.06□□□□□ -0.8
LIG1-203ENST00000536218 NIPBLQ6KC79 2804 aaeCLIP10.06□□□□□ -0.8
LIG1-203ENST00000536218 KMT2BQ9UMN6 2715 aaPredicted RBP10.06□□□□□ -0.8
LIG1-203ENST00000536218 GHRHP01286 108 aa10.06□□□□□ -0.8
LIG1-203ENST00000536218 C4orf3Q8WVX3 66 aa10.06□□□□□ -0.8
LIG1-203ENST00000536218 CDKN2A-AS1Q9UH64 79 aa10.06□□□□□ -0.8
LIG1-203ENST00000536218 Q6JHZ5 121 aa10.04□□□□□ -0.8
LIG1-203ENST00000536218 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.04□□□□□ -0.8
LIG1-203ENST00000536218 IGHV1OR15-1A0A075B7D0 117 aa10.04□□□□□ -0.8
LIG1-203ENST00000536218 IGKV2-29A2NJV5 120 aaPredicted RBP10.04□□□□□ -0.8
LIG1-203ENST00000536218 AKAP9Q99996 3911 aa10.04□□□□□ -0.8
LIG1-203ENST00000536218 IGHV3-16A0A0C4DH30 117 aa10.04□□□□□ -0.8
LIG1-203ENST00000536218 SOSTDC1Q6X4U4 206 aa10.04□□□□□ -0.8
LIG1-203ENST00000536218 FAM236DA0A1B0GTK5 79 aa10.03□□□□□ -0.8
LIG1-203ENST00000536218 FAM236CP0DP71 79 aa10.03□□□□□ -0.8
LIG1-203ENST00000536218 KRTAP1-1Q07627 177 aa10.03□□□□□ -0.8
LIG1-203ENST00000536218 FAM222AQ5U5X8 452 aa10.03□□□□□ -0.8
LIG1-203ENST00000536218 A0A0U1RQV1 116 aa10.03□□□□□ -0.8
LIG1-203ENST00000536218 FN1P02751 2386 aaKnown RBP10.03□□□□□ -0.8
LIG1-203ENST00000536218 RBMY1BA6NDE4 496 aaKnown RBP10.02□□□□□ -0.8
LIG1-203ENST00000536218 RBMY1EA6NEQ0 496 aaKnown RBP10.02□□□□□ -0.8
LIG1-203ENST00000536218 RBMY1DP0C7P1 496 aaKnown RBP10.02□□□□□ -0.8
LIG1-203ENST00000536218 RBMY1A1P0DJD3 496 aaKnown RBP10.02□□□□□ -0.8
LIG1-203ENST00000536218 RBMY1CP0DJD4 496 aa10.02□□□□□ -0.8
LIG1-203ENST00000536218 RBMY1FQ15415 496 aaKnown RBP10.02□□□□□ -0.8
LIG1-203ENST00000536218 TIMM17BO60830 172 aa10.02□□□□□ -0.81
LIG1-203ENST00000536218 PIK3CD-AS1Q5SR53 167 aa10.02□□□□□ -0.81
LIG1-203ENST00000536218 FAM104AQ969W3 186 aa10.02□□□□□ -0.81
LIG1-203ENST00000536218 NCR3O14931 201 aa10.02□□□□□ -0.81
LIG1-203ENST00000536218 TMEM86BQ8N661 226 aa10.02□□□□□ -0.81
LIG1-203ENST00000536218 F8WDY8 70 aa10.01□□□□□ -0.81
LIG1-203ENST00000536218 PROK1P58294 105 aa10.01□□□□□ -0.81
LIG1-203ENST00000536218 DEFB114Q30KQ6 69 aa10.01□□□□□ -0.81
LIG1-203ENST00000536218 NDUFA1O15239 70 aa10.01□□□□□ -0.81
LIG1-203ENST00000536218 ZNF415Q09FC8 603 aa10.01□□□□□ -0.81
LIG1-203ENST00000536218 NDUFC2O95298 119 aa10□□□□□ -0.81
LIG1-203ENST00000536218 CCL24O00175 119 aa10□□□□□ -0.81
LIG1-203ENST00000536218 UBE2D4Q9Y2X8 147 aa10□□□□□ -0.81
LIG1-203ENST00000536218 RPL28P46779 137 aaKnown RBP10□□□□□ -0.81
LIG1-203ENST00000536218 LINC01006Q8NI28 216 aa10□□□□□ -0.81
LIG1-203ENST00000536218 MAP6D1Q9H9H5 199 aa10□□□□□ -0.81
LIG1-203ENST00000536218 SETXQ7Z333 2677 aaKnown RBP10□□□□□ -0.81
LIG1-203ENST00000536218 IGHV3OR16-12A0A075B7B8 117 aa9.99□□□□□ -0.81
LIG1-203ENST00000536218 A0A087WYN8 130 aa9.99□□□□□ -0.81
LIG1-203ENST00000536218 IGHV3-38A0A0C4DH36 116 aa9.99□□□□□ -0.81
LIG1-203ENST00000536218 DGAT2L7PQ6IED9 249 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms