RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 Q8N976 141 aa4.45□□□□□ -1.7
SDCBP-208ENST00000520228 DEFB104AQ8WTQ1 72 aa4.45□□□□□ -1.7
SDCBP-208ENST00000520228 UBE2WQ96B02 151 aa4.45□□□□□ -1.7
SDCBP-208ENST00000520228 RMI2Q96E14 147 aa4.45□□□□□ -1.7
SDCBP-208ENST00000520228 MRAP2Q96G30 205 aa4.45□□□□□ -1.7
SDCBP-208ENST00000520228 RNF185Q96GF1 192 aa4.45□□□□□ -1.7
SDCBP-208ENST00000520228 PKD1P98161 4303 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 IGKV2D-24A0A075B6R9 120 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 TRBV6-5A0A0K0K1A5 114 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 SDHAF1A6NFY7 115 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 UBE2L6O14933 153 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 CRPP02741 224 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 S100A8P05109 93 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 Q0VG73 95 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 PPDPFQ9H3Y8 114 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 ST20Q9HBF5 79 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 PCLOQ9Y6V0 5065 aa4.44□□□□□ -1.7
SDCBP-208ENST00000520228 TMEM218A2RU14 115 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 LRCOL1A6NCL2 159 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 F8W036 122 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 SMKR1H3BMG3 65 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 I3L3M4 83 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 NCR2O95944 276 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 PPP1R17O96001 155 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 PMCHP20382 165 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 FUSP35637 526 aaKnown RBP eCLIP4.43□□□□□ -1.7
SDCBP-208ENST00000520228 RPS10P46783 165 aaKnown RBP4.43□□□□□ -1.7
SDCBP-208ENST00000520228 HBBP68871 147 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 FAM104BQ5XKR9 115 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 MRPL54Q6P161 138 aaKnown RBP4.43□□□□□ -1.7
SDCBP-208ENST00000520228 ENHOQ6UWT2 76 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 LINC01561Q8N1V8 128 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 LINC00269Q8N2A0 174 aa4.43□□□□□ -1.7
SDCBP-208ENST00000520228 HERC2O95714 4834 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 A0A1B0GXF2 115 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 LECT2O14960 151 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 APCSP02743 223 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 CKS2P33552 79 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 MIAQ16674 131 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 MRPL51Q4U2R6 128 aaKnown RBP4.42□□□□□ -1.7
SDCBP-208ENST00000520228 AMMECR1LQ6DCA0 310 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 ATP5L2Q7Z4Y8 100 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 COMMD7Q86VX2 200 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 Q8N814 137 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 BAALCQ8WXS3 180 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 TMEM70Q9BUB7 260 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 PKHD1P08F94 4074 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 DNAH11Q96DT5 4516 aa4.42□□□□□ -1.7
SDCBP-208ENST00000520228 IGLV4-60A0A075B6I1 120 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.41□□□□□ -1.7
SDCBP-208ENST00000520228 TRBV27A0A0K0K1C4 114 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 IGKV2-29A2NJV5 120 aaPredicted RBP4.41□□□□□ -1.7
SDCBP-208ENST00000520228 LINC00862A6NCI5 91 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 ADCYAP1P18509 176 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 FCER1GP30273 86 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 POLR2KP53803 58 aaKnown RBP4.41□□□□□ -1.7
SDCBP-208ENST00000520228 REG3AQ06141 175 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 WFDC2Q14508 124 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 CLPSL2Q6UWE3 100 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 C20orf203Q8NBC4 194 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 SEC11CQ9BY50 192 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 TMEM242Q9NWH2 141 aa4.41□□□□□ -1.7
SDCBP-208ENST00000520228 TRAV8-4A0A0B4J246 113 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 D6R8Y8 96 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 PPBPP02775 128 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 FGF6P10767 208 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 RNASEKQ6P5S7 137 aaKnown RBP4.4□□□□□ -1.71
SDCBP-208ENST00000520228 KRTAP11-1Q8IUC1 163 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 TMEM101Q96IK0 257 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 BTF3L4Q96K17 158 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 IMMP2LQ96T52 175 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 C20orf78Q9BR46 151 aa4.4□□□□□ -1.71
SDCBP-208ENST00000520228 IGLV10-54A0A075B6I4 117 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 TRBV24-1A0A075B6N3 115 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 C7orf77A4D0Y5 90 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 HLA-DQA1P01909 254 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 ESDP10768 282 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 ZNF25P17030 456 aaPredicted RBP4.39□□□□□ -1.71
SDCBP-208ENST00000520228 KRTAP12-2P59991 146 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 KRTAP10-1P60331 282 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 TMEM136Q6ZRR5 245 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 ORMDL3Q8N138 153 aa4.39□□□□□ -1.71
SDCBP-208ENST00000520228 KIAA1109Q2LD37 5005 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.38□□□□□ -1.71
SDCBP-208ENST00000520228 IGKV3OR2-268A0A0C4DH90 116 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 TCAPO15273 167 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 NPYP01303 97 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 S100PP25815 95 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 KRTAP26-1Q6PEX3 210 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 MRPL52Q86TS9 123 aaKnown RBP4.38□□□□□ -1.71
SDCBP-208ENST00000520228 OR5A1Q8NGJ0 315 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 PRELID3AQ96N28 172 aa4.38□□□□□ -1.71
SDCBP-208ENST00000520228 SMAGPQ0VAQ4 97 aa4.37□□□□□ -1.71
SDCBP-208ENST00000520228 C10orf91Q5T1B1 145 aa4.37□□□□□ -1.71
SDCBP-208ENST00000520228 SMIM2Q9BVW6 85 aa4.37□□□□□ -1.71
SDCBP-208ENST00000520228 CARHSP1Q9Y2V2 147 aaKnown RBP4.37□□□□□ -1.71
SDCBP-208ENST00000520228 DYNC1H1Q14204 4646 aaKnown RBP4.37□□□□□ -1.71
SDCBP-208ENST00000520228 TRAV9-1A0A075B6T8 112 aa4.36□□□□□ -1.71
SDCBP-208ENST00000520228 RAB5AP20339 215 aa4.36□□□□□ -1.71
SDCBP-208ENST00000520228 RHEBQ15382 184 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms