RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 LINC01556Q5JQF7 62 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 WFDC10BQ8IUB3 73 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 LINC01561Q8N1V8 128 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 CD164L2Q6UWJ8 174 aa10.9□□□□□ -0.66
NUP54-214ENST00000514307 PCP2Q8IVA1 136 aa10.9□□□□□ -0.66
NUP54-214ENST00000514307 PRR34Q9NV39 138 aa10.9□□□□□ -0.66
NUP54-214ENST00000514307 LINC00588Q9Y4M8 146 aa10.9□□□□□ -0.66
NUP54-214ENST00000514307 K7EP13 123 aa10.89□□□□□ -0.67
NUP54-214ENST00000514307 DNAH10OSP0CZ25 163 aa10.89□□□□□ -0.67
NUP54-214ENST00000514307 MIAQ16674 131 aa10.89□□□□□ -0.67
NUP54-214ENST00000514307 UPK3BQ9BT76 320 aa10.89□□□□□ -0.67
NUP54-214ENST00000514307 APLNQ9ULZ1 77 aa10.89□□□□□ -0.67
NUP54-214ENST00000514307 A0A087WZ39 114 aa10.88□□□□□ -0.67
NUP54-214ENST00000514307 IGHV3OR16-9A0A0B4J2B5 98 aa10.88□□□□□ -0.67
NUP54-214ENST00000514307 SPINK8P0C7L1 97 aa10.88□□□□□ -0.67
NUP54-214ENST00000514307 CHCHD10Q8WYQ3 142 aaPredicted RBP10.88□□□□□ -0.67
NUP54-214ENST00000514307 ZNF815PA8K554 130 aa10.87□□□□□ -0.67
NUP54-214ENST00000514307 XCL1P47992 114 aa10.87□□□□□ -0.67
NUP54-214ENST00000514307 MAPKAPK5-AS1Q8N8E1 139 aa10.87□□□□□ -0.67
NUP54-214ENST00000514307 UBE2WQ96B02 151 aa10.87□□□□□ -0.67
NUP54-214ENST00000514307 HIGD1BQ9P298 99 aa10.87□□□□□ -0.67
NUP54-214ENST00000514307 TENM3Q9P273 2699 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 IGHV3-64A0A075B6Q5 118 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 COX7A2LO14548 114 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 CTAG1AP78358 180 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 CLPSL2Q6UWE3 100 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 ENHOQ6UWT2 76 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 C10orf126Q8N4M7 172 aa10.86□□□□□ -0.67
NUP54-214ENST00000514307 TRAV8-3A0A0A6YYJ7 113 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 IGLV5-39A0A0G2JS06 123 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 MALP21145 153 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 SCGB1D4Q6XE38 83 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 C5orf38Q86SI9 138 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 UBE2DNLQ8IWF7 75 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 Q8N3U1 123 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 Q9H8V8 135 aa10.85□□□□□ -0.67
NUP54-214ENST00000514307 LINC00587B1AMM8 73 aa10.84□□□□□ -0.67
NUP54-214ENST00000514307 SMIM1B2RUZ4 78 aa10.84□□□□□ -0.67
NUP54-214ENST00000514307 APOMO95445 188 aa10.84□□□□□ -0.67
NUP54-214ENST00000514307 SFTA2Q6UW10 78 aa10.83□□□□□ -0.68
NUP54-214ENST00000514307 NDUFA12Q9UI09 145 aa10.83□□□□□ -0.68
NUP54-214ENST00000514307 IGLV10-54A0A075B6I4 117 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 GAGE12HA6NDE8 117 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 IBA57-AS1B1ANH7 110 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 M0R143 59 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 PRSS2P07478 247 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 TAL2Q16559 108 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 C6orf226Q5I0X4 101 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 ZFAND6Q6FIF0 208 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 COX7B2Q8TF08 81 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 RMI2Q96E14 147 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 TTTY13Q9BZ97 58 aa10.82□□□□□ -0.68
NUP54-214ENST00000514307 HERV-K104P63124 156 aa10.81□□□□□ -0.68
NUP54-214ENST00000514307 CIRBPQ14011 172 aaKnown RBP10.81□□□□□ -0.68
NUP54-214ENST00000514307 C2orf91Q6ZV80 131 aa10.81□□□□□ -0.68
NUP54-214ENST00000514307 HUWE1Q7Z6Z7 4374 aaKnown RBP10.8□□□□□ -0.68
NUP54-214ENST00000514307 TSPEAR-AS2P59090 65 aa10.8□□□□□ -0.68
NUP54-214ENST00000514307 FOXI1Q12951 378 aa10.8□□□□□ -0.68
NUP54-214ENST00000514307 C1orf43Q9BWL3 253 aa10.8□□□□□ -0.68
NUP54-214ENST00000514307 NDUFA1O15239 70 aa10.79□□□□□ -0.68
NUP54-214ENST00000514307 HSD52Q0P140 79 aa10.79□□□□□ -0.68
NUP54-214ENST00000514307 SRSF9Q13242 221 aaKnown RBP eCLIP10.79□□□□□ -0.68
NUP54-214ENST00000514307 TOMM7Q9P0U1 55 aa10.79□□□□□ -0.68
NUP54-214ENST00000514307 CFAP161Q6P656 301 aa10.78□□□□□ -0.68
NUP54-214ENST00000514307 MUC7Q8TAX7 377 aa10.78□□□□□ -0.68
NUP54-214ENST00000514307 WWC2-AS2Q96NR7 200 aa10.78□□□□□ -0.68
NUP54-214ENST00000514307 HIST1H4GQ99525 98 aa10.78□□□□□ -0.68
NUP54-214ENST00000514307 COX11Q9Y6N1 276 aa10.78□□□□□ -0.68
NUP54-214ENST00000514307 Q8IZM0 81 aa10.77□□□□□ -0.69
NUP54-214ENST00000514307 IGKV2D-24A0A075B6R9 120 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 A0A0J9YXY3 114 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 TMEM238C9JI98 176 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 TIMM17BO60830 172 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 CKS1BP61024 79 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 LBHQ53QV2 105 aaPredicted RBP10.76□□□□□ -0.69
NUP54-214ENST00000514307 Q6ZVH6 145 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 DNAH9Q9NYC9 4486 aa10.76□□□□□ -0.69
NUP54-214ENST00000514307 CXCL5P42830 114 aa10.75□□□□□ -0.69
NUP54-214ENST00000514307 HINT1P49773 126 aaPredicted RBP10.75□□□□□ -0.69
NUP54-214ENST00000514307 ORAOV1Q8WV07 137 aa10.75□□□□□ -0.69
NUP54-214ENST00000514307 TM2D2Q9BX73 214 aa10.75□□□□□ -0.69
NUP54-214ENST00000514307 SPANXB1Q9NS25 103 aaPredicted RBP10.75□□□□□ -0.69
NUP54-214ENST00000514307 COL7A1Q02388 2944 aa10.74□□□□□ -0.69
NUP54-214ENST00000514307 TTC32Q5I0X7 151 aa10.74□□□□□ -0.69
NUP54-214ENST00000514307 ZNF625Q96I27 306 aaPredicted RBP10.74□□□□□ -0.69
NUP54-214ENST00000514307 TP73-AS1Q9UF72 201 aa10.74□□□□□ -0.69
NUP54-214ENST00000514307 GCSHP23434 173 aa10.73□□□□□ -0.69
NUP54-214ENST00000514307 COPS9Q8WXC6 57 aa10.73□□□□□ -0.69
NUP54-214ENST00000514307 Q9HAA7 133 aa10.73□□□□□ -0.69
NUP54-214ENST00000514307 F8WDY8 70 aa10.72□□□□□ -0.69
NUP54-214ENST00000514307 PTTG1IPP53801 180 aa10.72□□□□□ -0.69
NUP54-214ENST00000514307 BATFQ16520 125 aa10.72□□□□□ -0.69
NUP54-214ENST00000514307 BVES-AS1Q5T3Y7 98 aa10.72□□□□□ -0.69
NUP54-214ENST00000514307 CEND1Q8N111 149 aa10.72□□□□□ -0.69
NUP54-214ENST00000514307 SNHG12Q9BXW3 62 aa10.72□□□□□ -0.69
NUP54-214ENST00000514307 A6NDN8 102 aa10.71□□□□□ -0.69
NUP54-214ENST00000514307 MEIG1Q5JSS6 88 aa10.71□□□□□ -0.69
NUP54-214ENST00000514307 KRTAP26-1Q6PEX3 210 aa10.71□□□□□ -0.69
NUP54-214ENST00000514307 TMEM238LA0A1B0GVL6 79 aa10.7□□□□□ -0.7
NUP54-214ENST00000514307 A6NJY4 79 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms