RNA–Protein interactions for RNA: ENST00000511628.1

CHD1-207, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 3

Gene CHD1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-207ENST00000511628 QRICH2Q9H0J4 1663 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 POLA1P09884 1462 aaPredicted RBP0.11□□□□□ -2.39
CHD1-207ENST00000511628 NDUFC1O43677 76 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 SNCAP37840 140 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 UBE2D3P61077 147 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 UBE2D2P62837 147 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 DEFB109BQ30KR1 87 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 VAMP8Q9BV40 100 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 LINC00846Q9NV44 126 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 LRP6O75581 1613 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 NCOA3Q9Y6Q9 1424 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 MYOM1P52179 1685 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 WNK2Q9Y3S1 2297 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 NRKQ7Z2Y5 1582 aa0.11□□□□□ -2.39
CHD1-207ENST00000511628 PZPP20742 1482 aa0.1□□□□□ -2.39
CHD1-207ENST00000511628 URB1O60287 2271 aaKnown RBP0.1□□□□□ -2.39
CHD1-207ENST00000511628 TRBV7-4A0A0J9YYF1 115 aa0.1□□□□□ -2.39
CHD1-207ENST00000511628 TMEM218A2RU14 115 aa0.1□□□□□ -2.39
CHD1-207ENST00000511628 CRYM-AS1A6NIL9 109 aa0.1□□□□□ -2.39
CHD1-207ENST00000511628 SPRR1AP35321 89 aa0.1□□□□□ -2.39
CHD1-207ENST00000511628 FAM223AQ8IWN6 122 aa0.1□□□□□ -2.39
CHD1-207ENST00000511628 HRNRQ86YZ3 2850 aaPredicted RBP0.1□□□□□ -2.39
CHD1-207ENST00000511628 NCOR1O75376 2440 aa0.09□□□□□ -2.39
CHD1-207ENST00000511628 ZNF292O60281 2723 aa0.09□□□□□ -2.39
CHD1-207ENST00000511628 LRP1Q07954 4544 aaKnown RBP0.09□□□□□ -2.39
CHD1-207ENST00000511628 ARHGAP5Q13017 1502 aa0.09□□□□□ -2.39
CHD1-207ENST00000511628 ZNF236Q9UL36 1845 aa0.09□□□□□ -2.39
CHD1-207ENST00000511628 FXYD6-FXYD2A0A087WZ82 144 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 I3L2K1 104 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 LINC00032P0C843 101 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 COX6B1P14854 86 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 C10orf113Q5VZT2 155 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 DEFB123Q8N688 67 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 FDCSPQ8NFU4 85 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 AP4S1Q9Y587 144 aa0.09□□□□□ -2.4
CHD1-207ENST00000511628 CUL7Q14999 1698 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 HMGXB3Q12766 1538 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 TRAV30A0A087WSZ9 112 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 SPINK4O60575 86 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 MPC2O95563 127 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 COX8AP10176 69 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 SEC11AP67812 179 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 ACBD7Q8N6N7 88 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 USMG5Q96IX5 58 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 ROBO1Q9Y6N7 1651 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 EHBP1L1Q8N3D4 1523 aa0.08□□□□□ -2.4
CHD1-207ENST00000511628 SSPOA2VEC9 5147 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 DIP2CQ9Y2E4 1556 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 SETBP1Q9Y6X0 1596 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 NSD3Q9BZ95 1437 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 FAM223BA6NKX1 122 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 PMCHL1Q16048 86 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 MAGI1Q96QZ7 1491 aaPredicted RBP0.07□□□□□ -2.4
CHD1-207ENST00000511628 MRC2Q9UBG0 1479 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 CSPG4Q6UVK1 2322 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 COL7A1Q02388 2944 aa0.07□□□□□ -2.4
CHD1-207ENST00000511628 GAPVD1Q14C86 1478 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 CCDC141Q6ZP82 1450 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 hADV29S1A0JD25 119 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 GNGT2O14610 69 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 SFTA2Q6UW10 78 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 C14orf144Q96I85 54 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 LINC01600Q96MT4 127 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 SPRR2GQ9BYE4 73 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 SPTA1P02549 2419 aa0.06□□□□□ -2.4
CHD1-207ENST00000511628 LAMC1P11047 1609 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 PAPPAQ13219 1627 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 SHROOM2Q13796 1616 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 PPRC1Q5VV67 1664 aaKnown RBP0.05□□□□□ -2.4
CHD1-207ENST00000511628 ADGRL2O95490 1459 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 ARHGEF12Q9NZN5 1544 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 TRBV25-1A0A075B6N4 114 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 C7orf77A4D0Y5 90 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 ATP6V1G2-DDX39BF2Z307 99 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 H3BQF6 201 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 SYS1-DBNDD2H3BUS1 97 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 ATOX1O00244 68 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 RBP2P50120 134 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 ALKAL2Q6UX46 152 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 TRGV9Q99603 122 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 DPY30Q9C005 99 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 CACFD1Q9UGQ2 172 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 CELSR1Q9NYQ6 3014 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 DNAJC13O75165 2243 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 TET3O43151 1660 aa0.05□□□□□ -2.4
CHD1-207ENST00000511628 KDM5AP29375 1690 aaKnown RBP0.05□□□□□ -2.4
CHD1-207ENST00000511628 SPHKAPQ2M3C7 1700 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 GVINP1Q7Z2Y8 2422 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 BTAF1O14981 1849 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 LINC00959A0A1B0GUT2 108 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 UQCRHP07919 91 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 SPRR1BP22528 89 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 S100A10P60903 97 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 HMGN3Q15651 99 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 PSMG4Q5JS54 123 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 SERP2Q8N6R1 65 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 ANK2Q01484 3957 aa0.04□□□□□ -2.4
CHD1-207ENST00000511628 C1orf167Q5SNV9 1468 aa0.03□□□□□ -2.4
CHD1-207ENST00000511628 PDCD11Q14690 1871 aaKnown RBP0.03□□□□□ -2.4
CHD1-207ENST00000511628 ZFYVE16Q7Z3T8 1539 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms