RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 AP5S1Q9NUS5 200 aa11.75□□□□□ -0.53
NPHP4-210ENST00000506941 IGHV3OR16-9A0A0B4J2B5 98 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 LINC00614P0C842 121 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 UBE2D1P51668 147 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 LINC00242Q5T6M2 205 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 Q6ZN92 141 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 ERASQ7Z444 233 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 LINC00526Q96FQ7 95 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 SCGB3A1Q96QR1 104 aa11.74□□□□□ -0.53
NPHP4-210ENST00000506941 TRGC2P03986 189 aa11.73□□□□□ -0.53
NPHP4-210ENST00000506941 COX6A2Q02221 97 aa11.73□□□□□ -0.53
NPHP4-210ENST00000506941 VCX2Q9H322 139 aa11.73□□□□□ -0.53
NPHP4-210ENST00000506941 MALP21145 153 aa11.72□□□□□ -0.53
NPHP4-210ENST00000506941 PMCHL1Q16048 86 aa11.72□□□□□ -0.53
NPHP4-210ENST00000506941 C2orf88Q9BSF0 95 aa11.72□□□□□ -0.53
NPHP4-210ENST00000506941 FAT1Q14517 4588 aa11.71□□□□□ -0.53
NPHP4-210ENST00000506941 LINC01549A6NIU2 74 aa11.7□□□□□ -0.54
NPHP4-210ENST00000506941 PAPPA-AS1Q5QFB9 102 aa11.7□□□□□ -0.54
NPHP4-210ENST00000506941 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.69□□□□□ -0.54
NPHP4-210ENST00000506941 RAB5BP61020 215 aa11.69□□□□□ -0.54
NPHP4-210ENST00000506941 SDIM1Q6ZPB5 146 aa11.69□□□□□ -0.54
NPHP4-210ENST00000506941 FAM19A3Q7Z5A8 133 aa11.69□□□□□ -0.54
NPHP4-210ENST00000506941 ZNF561-AS1K7EIQ3 104 aa11.68□□□□□ -0.54
NPHP4-210ENST00000506941 HBDP02042 147 aa11.68□□□□□ -0.54
NPHP4-210ENST00000506941 IGLV4-69A0A075B6H9 119 aa11.67□□□□□ -0.54
NPHP4-210ENST00000506941 A0A087WZ39 114 aa11.67□□□□□ -0.54
NPHP4-210ENST00000506941 PDZD11Q5EBL8 140 aa11.67□□□□□ -0.54
NPHP4-210ENST00000506941 VPS13BQ7Z7G8 4022 aa11.66□□□□□ -0.54
NPHP4-210ENST00000506941 IGHV3-64A0A075B6Q5 118 aa11.66□□□□□ -0.54
NPHP4-210ENST00000506941 PANO1I0J062 215 aa11.66□□□□□ -0.54
NPHP4-210ENST00000506941 APOMO95445 188 aa11.66□□□□□ -0.54
NPHP4-210ENST00000506941 ORAOV1Q8WV07 137 aa11.66□□□□□ -0.54
NPHP4-210ENST00000506941 KRTAP4-5Q9BYR2 181 aa11.66□□□□□ -0.54
NPHP4-210ENST00000506941 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.66□□□□□ -0.54
NPHP4-210ENST00000506941 A0A0J9YXV3 536 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.65□□□□□ -0.54
NPHP4-210ENST00000506941 SPAG11BQ08648 103 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 SCXQ7RTU7 201 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 Q8N1X5 172 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 OR10D4PQ8NGN7 298 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 CHCHD1Q96BP2 118 aaKnown RBP11.65□□□□□ -0.54
NPHP4-210ENST00000506941 CARD19Q96LW7 228 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 CST9LQ9H4G1 147 aa11.65□□□□□ -0.54
NPHP4-210ENST00000506941 LINC00310P59036 64 aa11.64□□□□□ -0.55
NPHP4-210ENST00000506941 SYCNQ0VAF6 134 aa11.64□□□□□ -0.55
NPHP4-210ENST00000506941 CHAC1Q9BUX1 264 aa11.64□□□□□ -0.55
NPHP4-210ENST00000506941 ABCA13Q86UQ4 5058 aa11.64□□□□□ -0.55
NPHP4-210ENST00000506941 SMR3BP02814 79 aaPredicted RBP11.63□□□□□ -0.55
NPHP4-210ENST00000506941 PMVKQ15126 192 aa11.63□□□□□ -0.55
NPHP4-210ENST00000506941 Q6ZRU5 148 aa11.63□□□□□ -0.55
NPHP4-210ENST00000506941 BAGE3Q86Y29 109 aa11.63□□□□□ -0.55
NPHP4-210ENST00000506941 CHTF8P0CG12 524 aa11.62□□□□□ -0.55
NPHP4-210ENST00000506941 HERVK_113P63121 156 aa11.62□□□□□ -0.55
NPHP4-210ENST00000506941 C2orf48Q96LS8 159 aa11.62□□□□□ -0.55
NPHP4-210ENST00000506941 CDKN2A-AS1Q9UH64 79 aa11.62□□□□□ -0.55
NPHP4-210ENST00000506941 PCLOQ9Y6V0 5065 aa11.61□□□□□ -0.55
NPHP4-210ENST00000506941 SEC11AP67812 179 aa11.61□□□□□ -0.55
NPHP4-210ENST00000506941 CIRBPQ14011 172 aaKnown RBP11.61□□□□□ -0.55
NPHP4-210ENST00000506941 KIAA0087Q14695 138 aa11.61□□□□□ -0.55
NPHP4-210ENST00000506941 LINC01561Q8N1V8 128 aa11.61□□□□□ -0.55
NPHP4-210ENST00000506941 CIRBP-AS1Q8TBR5 109 aa11.61□□□□□ -0.55
NPHP4-210ENST00000506941 CAMK2N2Q96S95 79 aa11.61□□□□□ -0.55
NPHP4-210ENST00000506941 GEMIN7Q9H840 131 aaKnown RBP11.61□□□□□ -0.55
NPHP4-210ENST00000506941 TINCRA0A1B0GVN0 87 aa11.6□□□□□ -0.55
NPHP4-210ENST00000506941 SERF1AO75920 110 aa11.6□□□□□ -0.55
NPHP4-210ENST00000506941 FAM19A2Q8N3H0 131 aa11.6□□□□□ -0.55
NPHP4-210ENST00000506941 ATP5LO75964 103 aa11.59□□□□□ -0.55
NPHP4-210ENST00000506941 SRRM2Q9UQ35 2752 aaKnown RBP11.59□□□□□ -0.55
NPHP4-210ENST00000506941 IGLV5-45A0A087WSX0 123 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 NUPR1O60356 82 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 ATP6V1G1O75348 118 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 HSBP1O75506 76 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 NDUFA6P56556 154 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 C10orf25Q5T742 122 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 LINC00469Q8N7U9 141 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 SPACA4Q8TDM5 124 aa11.58□□□□□ -0.56
NPHP4-210ENST00000506941 A0A096LNI7 61 aa11.57□□□□□ -0.56
NPHP4-210ENST00000506941 IGKV2-24A0A0C4DH68 120 aa11.56□□□□□ -0.56
NPHP4-210ENST00000506941 IGLC3P0DOY3 106 aa11.56□□□□□ -0.56
NPHP4-210ENST00000506941 Q5VSD8 79 aa11.56□□□□□ -0.56
NPHP4-210ENST00000506941 UNQ6190/PRO20217Q6UXQ8 127 aa11.56□□□□□ -0.56
NPHP4-210ENST00000506941 SMIM1B2RUZ4 78 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 F8WDY8 70 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 NDUFA1O15239 70 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BKO60814 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BJP06899 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BOP23527 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BBP33778 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BDP58876 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BCP62807 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST2H2BEQ16778 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.55□□□□□ -0.56
NPHP4-210ENST00000506941 C2orf82Q6UX34 121 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BHQ93079 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BNQ99877 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 HIST1H2BMQ99879 126 aa11.55□□□□□ -0.56
NPHP4-210ENST00000506941 MRPL35Q9NZE8 188 aaKnown RBP11.55□□□□□ -0.56
NPHP4-210ENST00000506941 EPM2AB3EWF7 344 aa11.54□□□□□ -0.56
NPHP4-210ENST00000506941 S100A1P23297 94 aa11.54□□□□□ -0.56
NPHP4-210ENST00000506941 RNF151Q2KHN1 245 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms