RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 IGLV1-50A0A075B6I6 118 aa12.87□□□□□ -0.35
SQSTM1-210ENST00000506042 FAM104BQ5XKR9 115 aa12.87□□□□□ -0.35
SQSTM1-210ENST00000506042 IFITM10A6NMD0 228 aa12.86□□□□□ -0.35
SQSTM1-210ENST00000506042 RPL13AP40429 203 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-210ENST00000506042 UBE2BP63146 152 aa12.86□□□□□ -0.35
SQSTM1-210ENST00000506042 AKAP14Q86UN6 197 aa12.86□□□□□ -0.35
SQSTM1-210ENST00000506042 H0Y9J4 135 aa12.85□□□□□ -0.35
SQSTM1-210ENST00000506042 TLX1NBP0CAT3 122 aa12.85□□□□□ -0.35
SQSTM1-210ENST00000506042 V9GYV3 84 aa12.85□□□□□ -0.35
SQSTM1-210ENST00000506042 TRBV24-1A0A075B6N3 115 aa12.84□□□□□ -0.35
SQSTM1-210ENST00000506042 RAB5AP20339 215 aa12.84□□□□□ -0.35
SQSTM1-210ENST00000506042 IFI27P40305 119 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-210ENST00000506042 MRPS36P82909 103 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-210ENST00000506042 MRPL51Q4U2R6 128 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-210ENST00000506042 LRP2P98164 4655 aa12.84□□□□□ -0.35
SQSTM1-210ENST00000506042 PPBPP02775 128 aa12.83□□□□□ -0.36
SQSTM1-210ENST00000506042 PACRGQ96M98 296 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-210ENST00000506042 SMIM2Q9BVW6 85 aa12.83□□□□□ -0.36
SQSTM1-210ENST00000506042 TNXBP22105 4242 aa12.83□□□□□ -0.36
SQSTM1-210ENST00000506042 FAM19A5Q7Z5A7 132 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-210ENST00000506042 IGHV3OR16-9A0A0B4J2B5 98 aa12.81□□□□□ -0.36
SQSTM1-210ENST00000506042 TNFRSF6BO95407 300 aa12.81□□□□□ -0.36
SQSTM1-210ENST00000506042 ADIRFQ15847 76 aa12.81□□□□□ -0.36
SQSTM1-210ENST00000506042 PRR26Q8N8Z3 221 aa12.81□□□□□ -0.36
SQSTM1-210ENST00000506042 TRBV30A0A0K0K1B3 111 aa12.8□□□□□ -0.36
SQSTM1-210ENST00000506042 A0A0U1RQV1 116 aa12.8□□□□□ -0.36
SQSTM1-210ENST00000506042 SRP19P09132 144 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-210ENST00000506042 GAGE2EQ4V326 116 aa12.8□□□□□ -0.36
SQSTM1-210ENST00000506042 GAGE2DQ9UEU5 116 aa12.8□□□□□ -0.36
SQSTM1-210ENST00000506042 NAT8Q9UHE5 227 aa12.8□□□□□ -0.36
SQSTM1-210ENST00000506042 M0QXV9 152 aa12.79□□□□□ -0.36
SQSTM1-210ENST00000506042 RPL39P62891 51 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-210ENST00000506042 SMDT1Q9H4I9 107 aa12.79□□□□□ -0.36
SQSTM1-210ENST00000506042 C2orf88Q9BSF0 95 aa12.78□□□□□ -0.36
SQSTM1-210ENST00000506042 SMIM27A0A1W2PRY6 76 aa12.77□□□□□ -0.37
SQSTM1-210ENST00000506042 D6R8Y8 96 aa12.76□□□□□ -0.37
SQSTM1-210ENST00000506042 NDUFC2-KCTD14E9PQ53 114 aa12.76□□□□□ -0.37
SQSTM1-210ENST00000506042 PRSS2P07478 247 aa12.76□□□□□ -0.37
SQSTM1-210ENST00000506042 RPL23P62829 140 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-210ENST00000506042 UNQ6190/PRO20217Q6UXQ8 127 aa12.76□□□□□ -0.37
SQSTM1-210ENST00000506042 Q6ZN92 141 aa12.76□□□□□ -0.37
SQSTM1-210ENST00000506042 C6orf48Q9UBA6 75 aa12.75□□□□□ -0.37
SQSTM1-210ENST00000506042 TEX43Q6ZNM6 134 aa12.74□□□□□ -0.37
SQSTM1-210ENST00000506042 ORMDL3Q8N138 153 aa12.74□□□□□ -0.37
SQSTM1-210ENST00000506042 CARHSP1Q9Y2V2 147 aaKnown RBP12.74□□□□□ -0.37
SQSTM1-210ENST00000506042 PYGO1Q9Y3Y4 419 aa12.74□□□□□ -0.37
SQSTM1-210ENST00000506042 FAM168BA1KXE4 195 aa12.73□□□□□ -0.37
SQSTM1-210ENST00000506042 CKS1BP61024 79 aa12.73□□□□□ -0.37
SQSTM1-210ENST00000506042 PEA15Q15121 130 aa12.73□□□□□ -0.37
SQSTM1-210ENST00000506042 PRR4Q16378 134 aa12.73□□□□□ -0.37
SQSTM1-210ENST00000506042 LINC01561Q8N1V8 128 aa12.73□□□□□ -0.37
SQSTM1-210ENST00000506042 TMEM141Q96I45 108 aa12.73□□□□□ -0.37
SQSTM1-210ENST00000506042 RNF213Q63HN8 5207 aa12.71□□□□□ -0.37
SQSTM1-210ENST00000506042 NUPR1O60356 82 aa12.71□□□□□ -0.37
SQSTM1-210ENST00000506042 LBHQ53QV2 105 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-210ENST00000506042 C10orf25Q5T742 122 aa12.71□□□□□ -0.37
SQSTM1-210ENST00000506042 MRPL54Q6P161 138 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-210ENST00000506042 ATP5L2Q7Z4Y8 100 aa12.7□□□□□ -0.38
SQSTM1-210ENST00000506042 LAMTOR2Q9Y2Q5 125 aa12.7□□□□□ -0.38
SQSTM1-210ENST00000506042 NPYP01303 97 aa12.69□□□□□ -0.38
SQSTM1-210ENST00000506042 SEC11AP67812 179 aa12.68□□□□□ -0.38
SQSTM1-210ENST00000506042 PAPPA-AS1Q5QFB9 102 aa12.68□□□□□ -0.38
SQSTM1-210ENST00000506042 TMEM136Q6ZRR5 245 aa12.68□□□□□ -0.38
SQSTM1-210ENST00000506042 PRELID3AQ96N28 172 aa12.68□□□□□ -0.38
SQSTM1-210ENST00000506042 G0S2P27469 103 aa12.67□□□□□ -0.38
SQSTM1-210ENST00000506042 C6orf226Q5I0X4 101 aa12.67□□□□□ -0.38
SQSTM1-210ENST00000506042 LINC00242Q5T6M2 205 aa12.67□□□□□ -0.38
SQSTM1-210ENST00000506042 MAP1LC3AQ9H492 121 aa12.67□□□□□ -0.38
SQSTM1-210ENST00000506042 CYSLTR1Q9Y271 337 aa12.67□□□□□ -0.38
SQSTM1-210ENST00000506042 NPSP0C0P6 89 aa12.66□□□□□ -0.38
SQSTM1-210ENST00000506042 VCX2Q9H322 139 aa12.66□□□□□ -0.38
SQSTM1-210ENST00000506042 IGLV4-3A0A075B6K6 122 aa12.65□□□□□ -0.38
SQSTM1-210ENST00000506042 ZNF861PO60384 105 aa12.65□□□□□ -0.38
SQSTM1-210ENST00000506042 KIAA0087Q14695 138 aa12.65□□□□□ -0.38
SQSTM1-210ENST00000506042 TOMM7Q9P0U1 55 aa12.65□□□□□ -0.38
SQSTM1-210ENST00000506042 K7EMI3 77 aa12.64□□□□□ -0.39
SQSTM1-210ENST00000506042 ORMDL2Q53FV1 153 aa12.64□□□□□ -0.39
SQSTM1-210ENST00000506042 C2orf82Q6UX34 121 aa12.64□□□□□ -0.39
SQSTM1-210ENST00000506042 hCG_2014768A0A024R1R8 64 aa12.63□□□□□ -0.39
SQSTM1-210ENST00000506042 A0A1B0GXF2 115 aa12.63□□□□□ -0.39
SQSTM1-210ENST00000506042 KRTAP1-4P0C5Y4 121 aa12.63□□□□□ -0.39
SQSTM1-210ENST00000506042 RPL28P46779 137 aaKnown RBP12.63□□□□□ -0.39
SQSTM1-210ENST00000506042 FAM104AQ969W3 186 aa12.63□□□□□ -0.39
SQSTM1-210ENST00000506042 Q8IZM0 81 aa12.62□□□□□ -0.39
SQSTM1-210ENST00000506042 ALKBH7Q9BT30 221 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-210ENST00000506042 CXCL5P42830 114 aa12.61□□□□□ -0.39
SQSTM1-210ENST00000506042 HERVK_113P63121 156 aa12.6□□□□□ -0.39
SQSTM1-210ENST00000506042 C9orf129Q5T035 196 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-210ENST00000506042 C2orf66Q6UXQ4 117 aa12.6□□□□□ -0.39
SQSTM1-210ENST00000506042 KRTAP11-1Q8IUC1 163 aa12.6□□□□□ -0.39
SQSTM1-210ENST00000506042 GEMIN7Q9H840 131 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-210ENST00000506042 LOC389332A0A1B0GUA5 103 aa12.59□□□□□ -0.39
SQSTM1-210ENST00000506042 PRSS47A8MTI9 375 aa12.59□□□□□ -0.39
SQSTM1-210ENST00000506042 TP73-AS1Q9UF72 201 aa12.59□□□□□ -0.39
SQSTM1-210ENST00000506042 C22orf24Q9Y442 160 aa12.58□□□□□ -0.4
SQSTM1-210ENST00000506042 F8VRH5 84 aa12.57□□□□□ -0.4
SQSTM1-210ENST00000506042 CRYGAP11844 174 aa12.57□□□□□ -0.4
SQSTM1-210ENST00000506042 Q8N8P6 123 aa12.57□□□□□ -0.4
SQSTM1-210ENST00000506042 MRPL55Q7Z7F7 128 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-210ENST00000506042 NXT2Q9NPJ8 142 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms