RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 UBL5Q9BZL1 73 aa7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 H3BUA1 57 aa7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 INSP01308 110 aa7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 TMEM258P61165 79 aa7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 ODF3Q96PU9 254 aa7.96□□□□□ -1.13
MSH5-SAPCD1-207ENST00000493662 ZNRF2Q8NHG8 242 aa7.96□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 Q9H8V8 135 aa7.96□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 HAMPP81172 84 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TMEM263Q8WUH6 116 aaKnown RBP7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 BRK1Q8WUW1 75 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TRAV25A0A0B4J276 109 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 A0A0J9YX75 114 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 C20orf197Q8N268 126 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 U3KQE9 123 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 IGKV2-29A2NJV5 120 aaPredicted RBP7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 Q9HAA7 133 aa7.95□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQV1 116 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 FAM240AA0A1B0GVK7 77 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 LENEPQ9Y5L5 61 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 IGLV1-40P01703 118 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 CLPSL2Q6UWE3 100 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 LY6G6DO95868 133 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 LINC01006Q8NI28 216 aa7.94□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 GHRHP01286 108 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 LINC00482Q8N8I6 264 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 LAMTOR3Q9UHA4 124 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 LST1O00453 97 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 MIAQ16674 131 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 SERP2Q8N6R1 65 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 CNFNQ9BYD5 112 aa7.93□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 C14orf132Q9NPU4 83 aa7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TRAV23DV6A0A075B6W5 121 aa7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TRAV13-2A0A0B4J235 113 aa7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 MRPL53Q96EL3 112 aaKnown RBP7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 K7EQG2 157 aa7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 RPL18AQ02543 176 aaKnown RBP7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 DEFB121Q5J5C9 76 aa7.92□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TMEM86BQ8N661 226 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 MAP6D1Q9H9H5 199 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 COX7A2LO14548 114 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 DCANP1Q8TF63 244 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 IGHV1-58A0A0C4DH39 117 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TMEM223A0PJW6 202 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 NXPH4O95158 308 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 TSPEAR-AS2P59090 65 aa7.91□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 IGLV2-18A0A075B6J9 118 aa7.9□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 K7EMT4 169 aa7.9□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 PFN2P35080 140 aa7.9□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 C20orf203Q8NBC4 194 aa7.9□□□□□ -1.14
MSH5-SAPCD1-207ENST00000493662 BAHCC1Q9P281 2608 aa7.9□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 USP17L23D6RBM5 183 aa7.9□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 RPL36AP83881 106 aaKnown RBP7.9□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 RPL36ALQ969Q0 106 aaKnown RBP7.9□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 FAM236DA0A1B0GTK5 79 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 FAM236CP0DP71 79 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 MALP21145 153 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 DEFB135Q30KP9 77 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 DEFB114Q30KQ6 69 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 NDUFC2O95298 119 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 RNASE3P12724 160 aaKnown RBP7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 V9GYY9 64 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 SBSPONQ8IVN8 264 aa7.89□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 Q6ZTI0 123 aa7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 HIVEP1P15822 2718 aa7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 NBPF19A0A087WUL8 3843 aa7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 TRBV7-7A0A0K0K1E9 115 aa7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 C4orf3Q8WVX3 66 aa7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 PRB2P02812 416 aaPredicted RBP7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 TIRAPP58753 221 aa7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 NSD1Q96L73 2696 aaPredicted RBP7.88□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 LECT2O14960 151 aa7.87□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 PSMG3-AS1Q96PY0 264 aa7.87□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 CXCL5P42830 114 aa7.87□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 A8MZ25 164 aa7.86□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 ORMDL1Q9P0S3 153 aa7.86□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 IGLV4-69A0A075B6H9 119 aa7.86□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 C6orf226Q5I0X4 101 aa7.86□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 VPS13CQ709C8 3753 aa7.86□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 TENM4Q6N022 2769 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 ZFHX3Q15911 3703 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 A0A087WVE0 104 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 H0YGX0 51 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 SND1-IT1Q9HBX3 110 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 IGIPA6NJ69 53 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 MED14OSP0DP75 135 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 C4orf26Q17RF5 130 aa7.85□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 IGLV4-3A0A075B6K6 122 aa7.84□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 Q9UF83 564 aa7.84□□□□□ -1.15
MSH5-SAPCD1-207ENST00000493662 IGLV10-54A0A075B6I4 117 aa7.83□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 IGHV4-4A0A075B6R2 117 aa7.83□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 KIR2DL5BQ8NHK3 375 aa7.83□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 ODF3L2Q3SX64 289 aa7.83□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 LINC00308Q8TCZ7 52 aa7.83□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 VSIG2Q96IQ7 327 aa7.83□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 POLR2KP53803 58 aaKnown RBP7.82□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 MPLKIPQ8TAP9 179 aa7.82□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 BRI3O95415 125 aa7.82□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 CDKN2A-AS1Q9UH64 79 aa7.82□□□□□ -1.16
MSH5-SAPCD1-207ENST00000493662 C1orf195Q5TG92 126 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms