RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 NBEAL2Q6ZNJ1 2754 aa14.74□□□□□ -0.05
CCDC88B-208ENST00000492980 IGHV4-30-4P0DP06 118 aa14.73□□□□□ -0.05
CCDC88B-208ENST00000492980 Q8NAQ8 132 aa14.73□□□□□ -0.05
CCDC88B-208ENST00000492980 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-208ENST00000492980 RBX1P62877 108 aa14.72□□□□□ -0.05
CCDC88B-208ENST00000492980 SFTA2Q6UW10 78 aa14.72□□□□□ -0.05
CCDC88B-208ENST00000492980 PRSS2P07478 247 aa14.72□□□□□ -0.05
CCDC88B-208ENST00000492980 Q9H8V8 135 aa14.72□□□□□ -0.05
CCDC88B-208ENST00000492980 LOC107984156A0A0G2JMH3 177 aa14.71□□□□□ -0.05
CCDC88B-208ENST00000492980 MIFP14174 115 aa14.71□□□□□ -0.05
CCDC88B-208ENST00000492980 ARL17AQ8IVW1 177 aa14.71□□□□□ -0.05
CCDC88B-208ENST00000492980 PAX4O43316 350 aa14.71□□□□□ -0.06
CCDC88B-208ENST00000492980 IGHV3-33P01772 117 aa14.7□□□□□ -0.06
CCDC88B-208ENST00000492980 F8W1H4 67 aa14.69□□□□□ -0.06
CCDC88B-208ENST00000492980 KRTAP24-1Q3LI83 254 aa14.69□□□□□ -0.06
CCDC88B-208ENST00000492980 RNF183Q96D59 192 aa14.69□□□□□ -0.06
CCDC88B-208ENST00000492980 CELA1Q9UNI1 258 aa14.69□□□□□ -0.06
CCDC88B-208ENST00000492980 IGKV3OR2-268A0A0C4DH90 116 aa14.69□□□□□ -0.06
CCDC88B-208ENST00000492980 DAD1P61803 113 aa14.69□□□□□ -0.06
CCDC88B-208ENST00000492980 LYRM7Q5U5X0 104 aa14.68□□□□□ -0.06
CCDC88B-208ENST00000492980 ZNF625Q96I27 306 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-208ENST00000492980 PRO0461Q9UI25 63 aa14.68□□□□□ -0.06
CCDC88B-208ENST00000492980 K7ERU9 68 aa14.68□□□□□ -0.06
CCDC88B-208ENST00000492980 NPC2P61916 151 aa14.68□□□□□ -0.06
CCDC88B-208ENST00000492980 A0A096LPF7 62 aa14.67□□□□□ -0.06
CCDC88B-208ENST00000492980 WFDC2Q14508 124 aa14.66□□□□□ -0.06
CCDC88B-208ENST00000492980 DAND5Q8N907 189 aa14.66□□□□□ -0.06
CCDC88B-208ENST00000492980 ERG28Q9UKR5 140 aa14.66□□□□□ -0.06
CCDC88B-208ENST00000492980 IFITM1P13164 125 aa14.66□□□□□ -0.06
CCDC88B-208ENST00000492980 PSMB2P49721 201 aa14.66□□□□□ -0.06
CCDC88B-208ENST00000492980 CIRBPQ14011 172 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-208ENST00000492980 OXLD1Q5BKU9 147 aa14.65□□□□□ -0.06
CCDC88B-208ENST00000492980 RNF151Q2KHN1 245 aa14.65□□□□□ -0.06
CCDC88B-208ENST00000492980 PRIMA1Q86XR5 153 aa14.65□□□□□ -0.06
CCDC88B-208ENST00000492980 MTURNQ8N3F0 131 aa14.65□□□□□ -0.06
CCDC88B-208ENST00000492980 IGHV3OR16-9A0A0B4J2B5 98 aa14.64□□□□□ -0.07
CCDC88B-208ENST00000492980 A0A1B0GUV1 79 aa14.64□□□□□ -0.07
CCDC88B-208ENST00000492980 H7C2G1 150 aa14.63□□□□□ -0.07
CCDC88B-208ENST00000492980 TCL1BO95988 128 aa14.63□□□□□ -0.07
CCDC88B-208ENST00000492980 ATP5G1P05496 136 aa14.63□□□□□ -0.07
CCDC88B-208ENST00000492980 SPART-AS1P0CW21 52 aa14.63□□□□□ -0.07
CCDC88B-208ENST00000492980 TMEM262E9PQX1 116 aa14.63□□□□□ -0.07
CCDC88B-208ENST00000492980 FLNBO75369 2602 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-208ENST00000492980 LINC00959A0A1B0GUT2 108 aa14.62□□□□□ -0.07
CCDC88B-208ENST00000492980 KRTAP10-11P60412 298 aa14.62□□□□□ -0.07
CCDC88B-208ENST00000492980 HERV-K104P63124 156 aa14.62□□□□□ -0.07
CCDC88B-208ENST00000492980 TRBV20-1A0A075B6N2 111 aa14.62□□□□□ -0.07
CCDC88B-208ENST00000492980 COX7B2Q8TF08 81 aa14.61□□□□□ -0.07
CCDC88B-208ENST00000492980 TRAV26-1A0A087WT03 109 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 SCGB1C2P0DMR2 95 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 LINC00308Q8TCZ7 52 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 A0A087WZ39 114 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 A0A0U1RRA0 63 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 TEX48A0A1B0GUV7 120 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 Q1RN00 199 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 MEIG1Q5JSS6 88 aa14.6□□□□□ -0.07
CCDC88B-208ENST00000492980 G3V4G9 280 aa14.59□□□□□ -0.07
CCDC88B-208ENST00000492980 SMCPP49901 116 aaPredicted RBP14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 CBY1Q9Y3M2 126 aa14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 SOSTDC1Q6X4U4 206 aa14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 SH2D6Q7Z4S9 175 aa14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 C5orf38Q86SI9 138 aa14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 C3orf56Q8N813 242 aa14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 TOMM7Q9P0U1 55 aa14.57□□□□□ -0.08
CCDC88B-208ENST00000492980 HTN3P15516 51 aa14.56□□□□□ -0.08
CCDC88B-208ENST00000492980 EGFEM1PQ0D2K5 195 aa14.56□□□□□ -0.08
CCDC88B-208ENST00000492980 ETDBQ3ZM63 59 aa14.56□□□□□ -0.08
CCDC88B-208ENST00000492980 TRBV30A0A0K0K1B3 111 aa14.56□□□□□ -0.08
CCDC88B-208ENST00000492980 SS18Q15532 418 aa14.55□□□□□ -0.08
CCDC88B-208ENST00000492980 TRIAP1O43715 76 aa14.54□□□□□ -0.08
CCDC88B-208ENST00000492980 CLPSL2Q6UWE3 100 aa14.54□□□□□ -0.08
CCDC88B-208ENST00000492980 SHISA2Q6UWI4 295 aa14.54□□□□□ -0.08
CCDC88B-208ENST00000492980 COPS9Q8WXC6 57 aa14.54□□□□□ -0.08
CCDC88B-208ENST00000492980 VPS25Q9BRG1 176 aa14.54□□□□□ -0.08
CCDC88B-208ENST00000492980 XCL1P47992 114 aa14.54□□□□□ -0.08
CCDC88B-208ENST00000492980 MRPL23Q16540 153 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-208ENST00000492980 ICOSQ9Y6W8 199 aa14.53□□□□□ -0.08
CCDC88B-208ENST00000492980 CMYA5Q8N3K9 4069 aa14.53□□□□□ -0.08
CCDC88B-208ENST00000492980 RETNQ9HD89 108 aa14.53□□□□□ -0.08
CCDC88B-208ENST00000492980 RPL13AP40429 203 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-208ENST00000492980 FBN1P35555 2871 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-208ENST00000492980 Q8N3U1 123 aa14.51□□□□□ -0.09
CCDC88B-208ENST00000492980 LINC00269Q8N2A0 174 aa14.51□□□□□ -0.09
CCDC88B-208ENST00000492980 PPDPFQ9H3Y8 114 aa14.51□□□□□ -0.09
CCDC88B-208ENST00000492980 ANGP03950 147 aaKnown RBP14.48□□□□□ -0.09
CCDC88B-208ENST00000492980 ATXN8Q156A1 80 aa14.48□□□□□ -0.09
CCDC88B-208ENST00000492980 LELP1Q5T871 98 aa14.48□□□□□ -0.09
CCDC88B-208ENST00000492980 LINC01561Q8N1V8 128 aa14.48□□□□□ -0.09
CCDC88B-208ENST00000492980 MIR7-3HGQ8N6C7 128 aa14.47□□□□□ -0.09
CCDC88B-208ENST00000492980 REG3AQ06141 175 aa14.46□□□□□ -0.09
CCDC88B-208ENST00000492980 IBA57-AS1B1ANH7 110 aa14.45□□□□□ -0.1
CCDC88B-208ENST00000492980 CD164L2Q6UWJ8 174 aa14.45□□□□□ -0.1
CCDC88B-208ENST00000492980 STAB1Q9NY15 2570 aa14.45□□□□□ -0.1
CCDC88B-208ENST00000492980 C9JAW5 83 aa14.44□□□□□ -0.1
CCDC88B-208ENST00000492980 COX6CP09669 75 aa14.44□□□□□ -0.1
CCDC88B-208ENST00000492980 C6orf226Q5I0X4 101 aa14.44□□□□□ -0.1
CCDC88B-208ENST00000492980 Q8IZM0 81 aa14.44□□□□□ -0.1
CCDC88B-208ENST00000492980 CHCHD10Q8WYQ3 142 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-208ENST00000492980 LINC00158P58513 81 aa14.44□□□□□ -0.1
CCDC88B-208ENST00000492980 CYSRT1A8MQ03 144 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 196.3 ms