RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 Q9H8V8 135 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 PRR34Q9NV39 138 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 APLNQ9ULZ1 77 aa4.78□□□□□ -1.64
SYNE1-229ENST00000490866 C11orf86A6NJI1 115 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 F8WDY8 70 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 APOMO95445 188 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 UBE2D1P51668 147 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 GAGE6Q13070 117 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 CD164L2Q6UWJ8 174 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 UBE2DNLQ8IWF7 75 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 BOD1L2Q8IYS8 172 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 TM2D2Q9BX73 214 aa4.77□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00959A0A1B0GUT2 108 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 TSTD3H0UI37 97 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 H0Y8G0 127 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 NMUP48645 174 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 REG3AQ06141 175 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 PYY3Q5JQD4 70 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 PLEKHB2Q96CS7 222 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 KRTAP4-11Q9BYQ6 195 aa4.76□□□□□ -1.65
SYNE1-229ENST00000490866 MRPL35Q9NZE8 188 aaKnown RBP4.76□□□□□ -1.65
SYNE1-229ENST00000490866 IGLV5-45A0A087WSX0 123 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 IBA57-AS1B1ANH7 110 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 MPV17L2Q567V2 206 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 TMEM170BQ5T4T1 132 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00242Q5T6M2 205 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00518Q8N0U6 118 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00269Q8N2A0 174 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 COPS9Q8WXC6 57 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 C12orf57Q99622 126 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00588Q9Y4M8 146 aa4.75□□□□□ -1.65
SYNE1-229ENST00000490866 A0A087WZ39 114 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 TRAV13-1A0A0B4J241 112 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 E9PLD3 99 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 DLEU1O43261 78 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 CIRBPQ14011 172 aaKnown RBP4.74□□□□□ -1.65
SYNE1-229ENST00000490866 ZC2HC1BQ5TFG8 222 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 CHAC1Q9BUX1 264 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 C1orf43Q9BWL3 253 aa4.74□□□□□ -1.65
SYNE1-229ENST00000490866 IGLV4-60A0A075B6I1 120 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 IGHV3OR16-9A0A0B4J2B5 98 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 IGHV1-58A0A0C4DH39 117 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 COX7A2LO14548 114 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 MALP21145 153 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 CXCL5P42830 114 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 HERV-K104P63124 156 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 Q6ZUT4 128 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00173Q6ZV60 143 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 Q6ZVH6 145 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 LINC00469Q8N7U9 141 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 Q8N976 141 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 KLK12Q9UKR0 248 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 PKIGQ9Y2B9 76 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 FBN3Q75N90 2809 aa4.73□□□□□ -1.65
SYNE1-229ENST00000490866 IGLV4-69A0A075B6H9 119 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 A0A0J9YXV3 536 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 MYMXA0A1B0GTQ4 84 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 TMEM223A0PJW6 202 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 ZNF561-AS1K7EIQ3 104 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 LEPROTO15243 131 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 PRSS2P07478 247 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 LGALS3P17931 250 aaKnown RBP4.72□□□□□ -1.65
SYNE1-229ENST00000490866 C14orf177Q52M58 125 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 SPATA45Q537H7 98 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 WFDC10BQ8IUB3 73 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 DEFB104AQ8WTQ1 72 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 CHCHD10Q8WYQ3 142 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-229ENST00000490866 FAM104AQ969W3 186 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 OPRPNQ99935 248 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-229ENST00000490866 UQCR10Q9UDW1 63 aa4.72□□□□□ -1.65
SYNE1-229ENST00000490866 IGHV3-30P01768 117 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 IGHV3-33P01772 117 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 IGHV3-30-3P0DP02 117 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 IGHV3-30-5P0DP03 117 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 COX8AP10176 69 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 ZNF22P17026 224 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-229ENST00000490866 KRTAP10-2P60368 255 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 C6orf226Q5I0X4 101 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 CASC10Q5T4H9 136 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 SLC25A34Q6PIV7 304 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 ENHOQ6UWT2 76 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 UBE2WQ96B02 151 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 MIEN1Q9BRT3 115 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 CDKN2A-AS1Q9UH64 79 aa4.71□□□□□ -1.66
SYNE1-229ENST00000490866 DNAH9Q9NYC9 4486 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 HUWE1Q7Z6Z7 4374 aaKnown RBP4.7□□□□□ -1.66
SYNE1-229ENST00000490866 J3QQQ9 107 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 CKS1BP61024 79 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 COX17Q14061 63 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 Q8IZM0 81 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 PAM16Q9Y3D7 125 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 TGP01266 2768 aa4.7□□□□□ -1.66
SYNE1-229ENST00000490866 IGHV3-64A0A075B6Q5 118 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 IGKV3OR2-268A0A0C4DH90 116 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 IGLV5-39A0A0G2JS06 123 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 NBDYA0A0U1RRE5 68 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 PSCAO43653 123 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 XCL1P47992 114 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 TAL2Q16559 108 aa4.69□□□□□ -1.66
SYNE1-229ENST00000490866 ZFAND6Q6FIF0 208 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms