RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CDC42SE2Q9NRR3 84 aa12.83□□□□□ -0.36
NPHP4-209ENST00000489180 IGLV2-18A0A075B6J9 118 aa12.82□□□□□ -0.36
NPHP4-209ENST00000489180 KPRPQ5T749 579 aaPredicted RBP12.82□□□□□ -0.36
NPHP4-209ENST00000489180 IMUPQ9GZP8 106 aa12.82□□□□□ -0.36
NPHP4-209ENST00000489180 IGLV4-69A0A075B6H9 119 aa12.81□□□□□ -0.36
NPHP4-209ENST00000489180 UBE2D3P61077 147 aa12.81□□□□□ -0.36
NPHP4-209ENST00000489180 UBE2D2P62837 147 aa12.81□□□□□ -0.36
NPHP4-209ENST00000489180 COX7CP15954 63 aa12.81□□□□□ -0.36
NPHP4-209ENST00000489180 SPINK6Q6UWN8 80 aa12.81□□□□□ -0.36
NPHP4-209ENST00000489180 TSPEAR-AS2P59090 65 aa12.81□□□□□ -0.36
NPHP4-209ENST00000489180 FAM19A3Q7Z5A8 133 aa12.8□□□□□ -0.36
NPHP4-209ENST00000489180 FAM30AQ9NZY2 134 aa12.8□□□□□ -0.36
NPHP4-209ENST00000489180 PTPN13Q12923 2485 aa12.8□□□□□ -0.36
NPHP4-209ENST00000489180 AVPP01185 164 aa12.8□□□□□ -0.36
NPHP4-209ENST00000489180 LINC00242Q5T6M2 205 aa12.8□□□□□ -0.36
NPHP4-209ENST00000489180 LY6G6DO95868 133 aa12.79□□□□□ -0.36
NPHP4-209ENST00000489180 ARHGAP32A7KAX9 2087 aa12.79□□□□□ -0.36
NPHP4-209ENST00000489180 ZNF73O43830 326 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-209ENST00000489180 LELP1Q5T871 98 aa12.79□□□□□ -0.36
NPHP4-209ENST00000489180 COX6A2Q02221 97 aa12.79□□□□□ -0.36
NPHP4-209ENST00000489180 CEP192Q8TEP8 1941 aa12.79□□□□□ -0.36
NPHP4-209ENST00000489180 SONP18583 2426 aaKnown RBP12.78□□□□□ -0.36
NPHP4-209ENST00000489180 M0R2N4 97 aa12.77□□□□□ -0.36
NPHP4-209ENST00000489180 C9orf116Q5BN46 136 aaPredicted RBP12.77□□□□□ -0.36
NPHP4-209ENST00000489180 ZNF843Q8N446 348 aa12.77□□□□□ -0.37
NPHP4-209ENST00000489180 DHRS4-AS1Q9P1J3 65 aa12.77□□□□□ -0.37
NPHP4-209ENST00000489180 ZNF580Q9UK33 172 aa12.77□□□□□ -0.37
NPHP4-209ENST00000489180 CYSRT1A8MQ03 144 aa12.76□□□□□ -0.37
NPHP4-209ENST00000489180 CACNA1AO00555 2505 aa12.76□□□□□ -0.37
NPHP4-209ENST00000489180 KIR2DL5BQ8NHK3 375 aa12.76□□□□□ -0.37
NPHP4-209ENST00000489180 IL17DQ8TAD2 202 aa12.76□□□□□ -0.37
NPHP4-209ENST00000489180 TRAV10A0A0B4J240 114 aa12.76□□□□□ -0.37
NPHP4-209ENST00000489180 LINC00694P0DN24 101 aa12.76□□□□□ -0.37
NPHP4-209ENST00000489180 Q8IZM0 81 aa12.75□□□□□ -0.37
NPHP4-209ENST00000489180 PRR3P79522 188 aaKnown RBP12.75□□□□□ -0.37
NPHP4-209ENST00000489180 COX17Q14061 63 aa12.75□□□□□ -0.37
NPHP4-209ENST00000489180 PRO3102Q9H379 93 aa12.75□□□□□ -0.37
NPHP4-209ENST00000489180 CHCHD7Q9BUK0 85 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 SMIM1B2RUZ4 78 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 A0A087WVE0 104 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 Q6JHZ5 121 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 ADAMTSL4-AS1Q5T5F5 129 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 UNQ6190/PRO20217Q6UXQ8 127 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 CELA1Q9UNI1 258 aa12.74□□□□□ -0.37
NPHP4-209ENST00000489180 A0A087WYN8 130 aa12.73□□□□□ -0.37
NPHP4-209ENST00000489180 IGLV9-49A0A0B4J1Y8 123 aa12.73□□□□□ -0.37
NPHP4-209ENST00000489180 NDUFC1O43677 76 aa12.73□□□□□ -0.37
NPHP4-209ENST00000489180 NANOS2P60321 138 aaKnown RBP12.72□□□□□ -0.37
NPHP4-209ENST00000489180 ODF3L2Q3SX64 289 aa12.72□□□□□ -0.37
NPHP4-209ENST00000489180 MRPL55Q7Z7F7 128 aaKnown RBP12.72□□□□□ -0.37
NPHP4-209ENST00000489180 A0A096LNJ9 63 aa12.72□□□□□ -0.37
NPHP4-209ENST00000489180 MRGPRG-AS1Q2M3A8 158 aa12.72□□□□□ -0.37
NPHP4-209ENST00000489180 NTM-AS1Q6ZSK4 140 aa12.71□□□□□ -0.38
NPHP4-209ENST00000489180 IGHV4-30-4P0DP06 118 aa12.7□□□□□ -0.38
NPHP4-209ENST00000489180 ATP5EP56381 51 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-209ENST00000489180 SHISA2Q6UWI4 295 aa12.7□□□□□ -0.38
NPHP4-209ENST00000489180 IGLV4-60A0A075B6I1 120 aa12.7□□□□□ -0.38
NPHP4-209ENST00000489180 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-209ENST00000489180 EML5Q05BV3 1969 aa12.7□□□□□ -0.38
NPHP4-209ENST00000489180 HIVEP3Q5T1R4 2406 aa12.7□□□□□ -0.38
NPHP4-209ENST00000489180 LOC107984640A0A0U1RRK4 108 aa12.69□□□□□ -0.38
NPHP4-209ENST00000489180 NAV3Q8IVL0 2385 aa12.69□□□□□ -0.38
NPHP4-209ENST00000489180 Q8N814 137 aa12.68□□□□□ -0.38
NPHP4-209ENST00000489180 C2CD3Q4AC94 2353 aa12.68□□□□□ -0.38
NPHP4-209ENST00000489180 A6NED7 52 aa12.68□□□□□ -0.38
NPHP4-209ENST00000489180 PTPRSQ13332 1948 aa12.67□□□□□ -0.38
NPHP4-209ENST00000489180 PLAC8L1A1L4L8 177 aa12.67□□□□□ -0.38
NPHP4-209ENST00000489180 TRBV10-3A0A0K0K1G6 114 aa12.67□□□□□ -0.38
NPHP4-209ENST00000489180 OXLD1Q5BKU9 147 aa12.66□□□□□ -0.38
NPHP4-209ENST00000489180 Q6ZSN1 163 aa12.66□□□□□ -0.38
NPHP4-209ENST00000489180 V9GYY9 64 aa12.66□□□□□ -0.38
NPHP4-209ENST00000489180 Q6Q795 121 aa12.65□□□□□ -0.38
NPHP4-209ENST00000489180 SMR3AQ99954 134 aa12.65□□□□□ -0.38
NPHP4-209ENST00000489180 C10orf142B7Z368 130 aa12.65□□□□□ -0.38
NPHP4-209ENST00000489180 C7orf33Q8WU49 177 aa12.65□□□□□ -0.38
NPHP4-209ENST00000489180 RETNQ9HD89 108 aa12.65□□□□□ -0.38
NPHP4-209ENST00000489180 RPL28P46779 137 aaKnown RBP12.65□□□□□ -0.38
NPHP4-209ENST00000489180 PRR15LQ9BU68 103 aa12.63□□□□□ -0.39
NPHP4-209ENST00000489180 Q8N9L7 120 aa12.63□□□□□ -0.39
NPHP4-209ENST00000489180 KRTAP10-9P60411 292 aa12.62□□□□□ -0.39
NPHP4-209ENST00000489180 AMELXQ99217 191 aa12.62□□□□□ -0.39
NPHP4-209ENST00000489180 LRP4O75096 1905 aa12.62□□□□□ -0.39
NPHP4-209ENST00000489180 SOSTDC1Q6X4U4 206 aa12.61□□□□□ -0.39
NPHP4-209ENST00000489180 ZNF706Q9Y5V0 76 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-209ENST00000489180 C6orf223Q8N319 242 aa12.6□□□□□ -0.39
NPHP4-209ENST00000489180 M0QXV9 152 aa12.6□□□□□ -0.39
NPHP4-209ENST00000489180 FHL2Q14192 279 aa12.6□□□□□ -0.39
NPHP4-209ENST00000489180 TRAV7A0A075B6U4 112 aa12.59□□□□□ -0.39
NPHP4-209ENST00000489180 A0A1W2PPR1 153 aa12.59□□□□□ -0.39
NPHP4-209ENST00000489180 K7ERS5 55 aa12.58□□□□□ -0.39
NPHP4-209ENST00000489180 C1orf137Q5JT78 98 aa12.58□□□□□ -0.39
NPHP4-209ENST00000489180 COX8CQ7Z4L0 72 aa12.58□□□□□ -0.39
NPHP4-209ENST00000489180 PIEZO2Q9H5I5 2752 aa12.58□□□□□ -0.4
NPHP4-209ENST00000489180 NAV2Q8IVL1 2488 aa12.58□□□□□ -0.4
NPHP4-209ENST00000489180 MYO18BQ8IUG5 2567 aa12.58□□□□□ -0.4
NPHP4-209ENST00000489180 RAI1Q7Z5J4 1906 aaPredicted RBP12.58□□□□□ -0.4
NPHP4-209ENST00000489180 C10orf25Q5T742 122 aa12.57□□□□□ -0.4
NPHP4-209ENST00000489180 EGFEM1PQ0D2K5 195 aa12.57□□□□□ -0.4
NPHP4-209ENST00000489180 BRI3O95415 125 aa12.57□□□□□ -0.4
NPHP4-209ENST00000489180 PLA2G2AP14555 144 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms