RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 J3QQQ9 107 aa8.74□□□□□ -1.01
VPS13D-205ENST00000473099 CRPP02741 224 aa8.74□□□□□ -1.01
VPS13D-205ENST00000473099 DNAH10OSP0CZ25 163 aa8.74□□□□□ -1.01
VPS13D-205ENST00000473099 LGALS3P17931 250 aaKnown RBP8.74□□□□□ -1.01
VPS13D-205ENST00000473099 COX6A2Q02221 97 aa8.74□□□□□ -1.01
VPS13D-205ENST00000473099 PCP2Q8IVA1 136 aa8.74□□□□□ -1.01
VPS13D-205ENST00000473099 UPK3BQ9BT76 320 aa8.74□□□□□ -1.01
VPS13D-205ENST00000473099 IGHV3OR16-9A0A0B4J2B5 98 aa8.73□□□□□ -1.01
VPS13D-205ENST00000473099 HIGD1BQ9P298 99 aa8.73□□□□□ -1.01
VPS13D-205ENST00000473099 KLK12Q9UKR0 248 aa8.73□□□□□ -1.01
VPS13D-205ENST00000473099 A0A087WZ39 114 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 IGLV5-39A0A0G2JS06 123 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 MYMXA0A1B0GTQ4 84 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 ZNF815PA8K554 130 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 K7EP13 123 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 IGHV3-30P01768 117 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 IGHV3-33P01772 117 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 SPINK8P0C7L1 97 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 IGHV3-30-3P0DP02 117 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 IGHV3-30-5P0DP03 117 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 MIAQ16674 131 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 CD164L2Q6UWJ8 174 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 LINC00588Q9Y4M8 146 aa8.72□□□□□ -1.01
VPS13D-205ENST00000473099 SMIM1B2RUZ4 78 aa8.71□□□□□ -1.02
VPS13D-205ENST00000473099 CLPSL2Q6UWE3 100 aa8.71□□□□□ -1.02
VPS13D-205ENST00000473099 APLNQ9ULZ1 77 aa8.71□□□□□ -1.02
VPS13D-205ENST00000473099 TRAV8-3A0A0A6YYJ7 113 aa8.7□□□□□ -1.02
VPS13D-205ENST00000473099 LINC00587B1AMM8 73 aa8.7□□□□□ -1.02
VPS13D-205ENST00000473099 XCL1P47992 114 aa8.7□□□□□ -1.02
VPS13D-205ENST00000473099 Q8N3U1 123 aa8.7□□□□□ -1.02
VPS13D-205ENST00000473099 C10orf126Q8N4M7 172 aa8.7□□□□□ -1.02
VPS13D-205ENST00000473099 CHCHD10Q8WYQ3 142 aaPredicted RBP8.7□□□□□ -1.02
VPS13D-205ENST00000473099 IGHV3-64A0A075B6Q5 118 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 ZFAND6Q6FIF0 208 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 SFTA2Q6UW10 78 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 ENHOQ6UWT2 76 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 SCGB1D4Q6XE38 83 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 C2orf91Q6ZV80 131 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 MAPKAPK5-AS1Q8N8E1 139 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 UBE2WQ96B02 151 aa8.69□□□□□ -1.02
VPS13D-205ENST00000473099 COX7A2LO14548 114 aa8.68□□□□□ -1.02
VPS13D-205ENST00000473099 TSPEAR-AS2P59090 65 aa8.68□□□□□ -1.02
VPS13D-205ENST00000473099 CTAG1AP78358 180 aa8.68□□□□□ -1.02
VPS13D-205ENST00000473099 UBE2DNLQ8IWF7 75 aa8.68□□□□□ -1.02
VPS13D-205ENST00000473099 TTTY13Q9BZ97 58 aa8.68□□□□□ -1.02
VPS13D-205ENST00000473099 M0R143 59 aa8.67□□□□□ -1.02
VPS13D-205ENST00000473099 APOMO95445 188 aa8.67□□□□□ -1.02
VPS13D-205ENST00000473099 HSD52Q0P140 79 aa8.67□□□□□ -1.02
VPS13D-205ENST00000473099 TAL2Q16559 108 aa8.67□□□□□ -1.02
VPS13D-205ENST00000473099 NDUFA12Q9UI09 145 aa8.67□□□□□ -1.02
VPS13D-205ENST00000473099 IGLV10-54A0A075B6I4 117 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 NDUFA1O15239 70 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 MALP21145 153 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 HERV-K104P63124 156 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 C5orf38Q86SI9 138 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 COX7B2Q8TF08 81 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 RMI2Q96E14 147 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 WWC2-AS2Q96NR7 200 aa8.66□□□□□ -1.02
VPS13D-205ENST00000473099 GAGE12HA6NDE8 117 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 IBA57-AS1B1ANH7 110 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 FOXI1Q12951 378 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 Q8IZM0 81 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 C1orf43Q9BWL3 253 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 Q9H8V8 135 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 TP73-AS1Q9UF72 201 aa8.65□□□□□ -1.02
VPS13D-205ENST00000473099 TMEM238C9JI98 176 aa8.64□□□□□ -1.03
VPS13D-205ENST00000473099 PRSS2P07478 247 aa8.64□□□□□ -1.03
VPS13D-205ENST00000473099 CXCL5P42830 114 aa8.64□□□□□ -1.03
VPS13D-205ENST00000473099 LBHQ53QV2 105 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-205ENST00000473099 SPANXB1Q9NS25 103 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-205ENST00000473099 TIMM17BO60830 172 aa8.63□□□□□ -1.03
VPS13D-205ENST00000473099 CIRBPQ14011 172 aaKnown RBP8.63□□□□□ -1.03
VPS13D-205ENST00000473099 MUC7Q8TAX7 377 aa8.63□□□□□ -1.03
VPS13D-205ENST00000473099 KRTAP3-3Q9BYR6 98 aa8.63□□□□□ -1.03
VPS13D-205ENST00000473099 KRTAP3-2Q9BYR7 98 aa8.63□□□□□ -1.03
VPS13D-205ENST00000473099 TOMM7Q9P0U1 55 aa8.63□□□□□ -1.03
VPS13D-205ENST00000473099 DNAH7Q8WXX0 4024 aa8.63□□□□□ -1.03
VPS13D-205ENST00000473099 DYNC2H1Q8NCM8 4307 aaKnown RBP8.62□□□□□ -1.03
VPS13D-205ENST00000473099 A0A0J9YXY3 114 aa8.62□□□□□ -1.03
VPS13D-205ENST00000473099 C6orf226Q5I0X4 101 aa8.62□□□□□ -1.03
VPS13D-205ENST00000473099 Q6ZVH6 145 aa8.62□□□□□ -1.03
VPS13D-205ENST00000473099 ORAOV1Q8WV07 137 aa8.62□□□□□ -1.03
VPS13D-205ENST00000473099 ZNF625Q96I27 306 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-205ENST00000473099 HIST1H4GQ99525 98 aa8.62□□□□□ -1.03
VPS13D-205ENST00000473099 COX11Q9Y6N1 276 aa8.62□□□□□ -1.03
VPS13D-205ENST00000473099 SRSF9Q13242 221 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS13D-205ENST00000473099 TTC32Q5I0X7 151 aa8.61□□□□□ -1.03
VPS13D-205ENST00000473099 CFAP161Q6P656 301 aa8.61□□□□□ -1.03
VPS13D-205ENST00000473099 KMT2CQ8NEZ4 4911 aaKnown RBP8.61□□□□□ -1.03
VPS13D-205ENST00000473099 IGKV2D-24A0A075B6R9 120 aa8.6□□□□□ -1.03
VPS13D-205ENST00000473099 GCSHP23434 173 aa8.6□□□□□ -1.03
VPS13D-205ENST00000473099 HINT1P49773 126 aaPredicted RBP8.6□□□□□ -1.03
VPS13D-205ENST00000473099 BVES-AS1Q5T3Y7 98 aa8.6□□□□□ -1.03
VPS13D-205ENST00000473099 KRTAP26-1Q6PEX3 210 aa8.6□□□□□ -1.03
VPS13D-205ENST00000473099 SNHG12Q9BXW3 62 aa8.6□□□□□ -1.03
VPS13D-205ENST00000473099 CKS1BP61024 79 aa8.59□□□□□ -1.03
VPS13D-205ENST00000473099 CEND1Q8N111 149 aa8.59□□□□□ -1.03
VPS13D-205ENST00000473099 COPS9Q8WXC6 57 aa8.59□□□□□ -1.03
VPS13D-205ENST00000473099 TM2D2Q9BX73 214 aa8.59□□□□□ -1.03
VPS13D-205ENST00000473099 SPANXDQ9BXN6 97 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms