RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 C9orf66Q5T8R8 295 aa9.77□□□□□ -0.85
CCDC88A-211ENST00000471947 SPANXA1Q9NS26 97 aa9.77□□□□□ -0.85
CCDC88A-211ENST00000471947 PKD1L1Q8TDX9 2849 aa9.77□□□□□ -0.85
CCDC88A-211ENST00000471947 EIF4EBP3O60516 100 aaPredicted RBP9.77□□□□□ -0.85
CCDC88A-211ENST00000471947 IGHV1-58A0A0C4DH39 117 aa9.77□□□□□ -0.85
CCDC88A-211ENST00000471947 RPL13AP40429 203 aaKnown RBP9.77□□□□□ -0.85
CCDC88A-211ENST00000471947 IGHV4-28A0A0C4DH34 117 aa9.76□□□□□ -0.85
CCDC88A-211ENST00000471947 C2orf82Q6UX34 121 aa9.76□□□□□ -0.85
CCDC88A-211ENST00000471947 DNAJC30Q96LL9 226 aa9.76□□□□□ -0.85
CCDC88A-211ENST00000471947 LINC00242Q5T6M2 205 aa9.75□□□□□ -0.85
CCDC88A-211ENST00000471947 LINC00269Q8N2A0 174 aa9.75□□□□□ -0.85
CCDC88A-211ENST00000471947 TCL1BO95988 128 aa9.75□□□□□ -0.85
CCDC88A-211ENST00000471947 CMC4P56277 68 aaPredicted RBP9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 KLK12Q9UKR0 248 aa9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 LINC01546A6NGU7 62 aa9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 J3QR89 54 aa9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 DAZ2Q13117 558 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 DAZ4Q86SG3 579 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 DAZ3Q9NR90 486 aaKnown RBP9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 CELA1Q9UNI1 258 aa9.74□□□□□ -0.85
CCDC88A-211ENST00000471947 TENM3Q9P273 2699 aa9.73□□□□□ -0.85
CCDC88A-211ENST00000471947 IGHV4-30-4P0DP06 118 aa9.73□□□□□ -0.85
CCDC88A-211ENST00000471947 UBE2WQ96B02 151 aa9.73□□□□□ -0.85
CCDC88A-211ENST00000471947 COX6CP09669 75 aa9.73□□□□□ -0.85
CCDC88A-211ENST00000471947 HERVK_113P63121 156 aa9.73□□□□□ -0.85
CCDC88A-211ENST00000471947 Q9HAA7 133 aa9.73□□□□□ -0.85
CCDC88A-211ENST00000471947 UBE2D3P61077 147 aa9.72□□□□□ -0.85
CCDC88A-211ENST00000471947 UBE2D2P62837 147 aa9.72□□□□□ -0.85
CCDC88A-211ENST00000471947 FHL2Q14192 279 aa9.72□□□□□ -0.85
CCDC88A-211ENST00000471947 UBE2D1P51668 147 aa9.72□□□□□ -0.85
CCDC88A-211ENST00000471947 CKS1BP61024 79 aa9.72□□□□□ -0.85
CCDC88A-211ENST00000471947 TAL2Q16559 108 aa9.71□□□□□ -0.85
CCDC88A-211ENST00000471947 MIR7-3HGQ8N6C7 128 aa9.71□□□□□ -0.85
CCDC88A-211ENST00000471947 TRBV6-8A0A0A6YYG3 113 aa9.71□□□□□ -0.85
CCDC88A-211ENST00000471947 C16orf95Q9H693 158 aa9.71□□□□□ -0.85
CCDC88A-211ENST00000471947 C19orf73Q9NVV2 129 aa9.71□□□□□ -0.86
CCDC88A-211ENST00000471947 BEAN1Q3B7T3 259 aa9.7□□□□□ -0.86
CCDC88A-211ENST00000471947 LYRM7Q5U5X0 104 aa9.7□□□□□ -0.86
CCDC88A-211ENST00000471947 APOC4P55056 127 aa9.7□□□□□ -0.86
CCDC88A-211ENST00000471947 RBX1P62877 108 aa9.7□□□□□ -0.86
CCDC88A-211ENST00000471947 PRO0255Q9UI72 69 aa9.7□□□□□ -0.86
CCDC88A-211ENST00000471947 NTN5Q8WTR8 489 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 CLUHP3Q96NS8 147 aa9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 CDC42SE2Q9NRR3 84 aa9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 TINCRA0A1B0GVN0 87 aa9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 RPL32P62910 135 aaKnown RBP9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 MRPS36P82909 103 aaKnown RBP9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 C9orf116Q5BN46 136 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 CFAP161Q6P656 301 aa9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 AKAP9Q99996 3911 aa9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 STAB2Q8WWQ8 2551 aa9.69□□□□□ -0.86
CCDC88A-211ENST00000471947 TRBV10-1A0A0K0K1A3 114 aa9.68□□□□□ -0.86
CCDC88A-211ENST00000471947 PRR3P79522 188 aaKnown RBP9.68□□□□□ -0.86
CCDC88A-211ENST00000471947 SS18Q15532 418 aa9.68□□□□□ -0.86
CCDC88A-211ENST00000471947 AMELXQ99217 191 aa9.68□□□□□ -0.86
CCDC88A-211ENST00000471947 ATP5G1P05496 136 aa9.68□□□□□ -0.86
CCDC88A-211ENST00000471947 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.67□□□□□ -0.86
CCDC88A-211ENST00000471947 SLC25A20O43772 301 aa9.67□□□□□ -0.86
CCDC88A-211ENST00000471947 UFSP1Q6NVU6 142 aa9.67□□□□□ -0.86
CCDC88A-211ENST00000471947 PYGO1Q9Y3Y4 419 aa9.66□□□□□ -0.86
CCDC88A-211ENST00000471947 PLAC8L1A1L4L8 177 aa9.66□□□□□ -0.86
CCDC88A-211ENST00000471947 TRIAP1O43715 76 aa9.66□□□□□ -0.86
CCDC88A-211ENST00000471947 COX7B2Q8TF08 81 aa9.66□□□□□ -0.86
CCDC88A-211ENST00000471947 SPART-AS1P0CW21 52 aa9.66□□□□□ -0.86
CCDC88A-211ENST00000471947 SMIM1B2RUZ4 78 aa9.65□□□□□ -0.86
CCDC88A-211ENST00000471947 HIGD2BQ4VC39 106 aa9.65□□□□□ -0.86
CCDC88A-211ENST00000471947 TRBV6-4A0A1B0GX49 114 aa9.65□□□□□ -0.86
CCDC88A-211ENST00000471947 CRPP02741 224 aa9.65□□□□□ -0.86
CCDC88A-211ENST00000471947 X6R8D5 127 aa9.65□□□□□ -0.87
CCDC88A-211ENST00000471947 G3V4G9 280 aa9.64□□□□□ -0.87
CCDC88A-211ENST00000471947 CSNK1G2-AS1Q8NCQ2 148 aa9.64□□□□□ -0.87
CCDC88A-211ENST00000471947 FAM104AQ969W3 186 aa9.64□□□□□ -0.87
CCDC88A-211ENST00000471947 KRTAP24-1Q3LI83 254 aa9.64□□□□□ -0.87
CCDC88A-211ENST00000471947 ANKRD29Q8N6D5 301 aa9.64□□□□□ -0.87
CCDC88A-211ENST00000471947 SND1-IT1Q9HBX3 110 aa9.63□□□□□ -0.87
CCDC88A-211ENST00000471947 ICOSQ9Y6W8 199 aa9.63□□□□□ -0.87
CCDC88A-211ENST00000471947 NANOS2P60321 138 aaKnown RBP9.63□□□□□ -0.87
CCDC88A-211ENST00000471947 F8W1H4 67 aa9.62□□□□□ -0.87
CCDC88A-211ENST00000471947 CRYBA4P53673 196 aa9.62□□□□□ -0.87
CCDC88A-211ENST00000471947 MIAQ16674 131 aa9.62□□□□□ -0.87
CCDC88A-211ENST00000471947 LINC00308Q8TCZ7 52 aa9.62□□□□□ -0.87
CCDC88A-211ENST00000471947 CARD19Q96LW7 228 aa9.62□□□□□ -0.87
CCDC88A-211ENST00000471947 TEX49A0A1B0GTD5 131 aa9.61□□□□□ -0.87
CCDC88A-211ENST00000471947 ZFAND6Q6FIF0 208 aa9.61□□□□□ -0.87
CCDC88A-211ENST00000471947 Q6ZTC4 211 aa9.61□□□□□ -0.87
CCDC88A-211ENST00000471947 EDA2RQ9HAV5 297 aa9.61□□□□□ -0.87
CCDC88A-211ENST00000471947 XAGE1AQ9HD64 81 aa9.61□□□□□ -0.87
CCDC88A-211ENST00000471947 LECT2O14960 151 aa9.61□□□□□ -0.87
CCDC88A-211ENST00000471947 LINC00959A0A1B0GUT2 108 aa9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 SLPIP03973 132 aa9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 REG3AQ06141 175 aa9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 C6orf223Q8N319 242 aa9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 SPANXB1Q9NS25 103 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 DNAL4O96015 105 aa9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 ATXN8Q156A1 80 aa9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 CHCHD10Q8WYQ3 142 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-211ENST00000471947 IGKV2D-24A0A075B6R9 120 aa9.59□□□□□ -0.87
CCDC88A-211ENST00000471947 NCR3O14931 201 aa9.59□□□□□ -0.87
CCDC88A-211ENST00000471947 GAGE12HA6NDE8 117 aa9.59□□□□□ -0.87
CCDC88A-211ENST00000471947 LINC01620Q4KN68 170 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms