RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 GSKIPQ9P0R6 139 aa1.09□□□□□ -2.23
USP40-211ENST00000464956 LOC100996750A0A140TA64 210 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 C7orf77A4D0Y5 90 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 PTGES3LE9PB15 166 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 H7C2G1 150 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 SNAI2O43623 268 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 HPGDSO60760 199 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 RAB3DO95716 219 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 PMCHP20382 165 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 SMCPP49901 116 aaPredicted RBP1.08□□□□□ -2.24
USP40-211ENST00000464956 CD164Q04900 197 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 C6orf226Q5I0X4 101 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 LCE5AQ5TCM9 118 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 Q5XG85 94 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 SNX29P2Q8IUI4 249 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 FAM210AQ96ND0 272 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 Q96NJ1 140 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 SCGB3A2Q96PL1 93 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 SEC22CQ9BRL7 303 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 FAM107BQ9H098 131 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 KCNIP2Q9NS61 270 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 MED9Q9NWA0 146 aa1.08□□□□□ -2.24
USP40-211ENST00000464956 TXNL4BQ9NX01 149 aaKnown RBP1.08□□□□□ -2.24
USP40-211ENST00000464956 CSDC2Q9Y534 153 aaKnown RBP1.08□□□□□ -2.24
USP40-211ENST00000464956 ETDCA0A1B0GVM5 59 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 A0A1W2PNM2 257 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 DISC1C4P0D8 188 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 F8VRH5 84 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 I3L3M4 83 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 IFNA1P01562 189 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 CXCL1P09341 107 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 SDC2P34741 201 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 CRIP1P50238 77 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 IGFL1Q6UW32 110 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 PQLC2Q6ZP29 291 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 C8orf59Q8N0T1 100 aaPredicted RBP1.07□□□□□ -2.24
USP40-211ENST00000464956 SAMD12Q8N8I0 201 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 TIMM21Q9BVV7 248 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 NPCDR1Q9BY65 106 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 CYSTM1Q9H1C7 97 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 TOMM7Q9P0U1 55 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 EPDR1Q9UM22 224 aa1.07□□□□□ -2.24
USP40-211ENST00000464956 C9orf170A2RU37 121 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 SDHAF1A6NFY7 115 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 A8MWL6 223 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 SCGB1D2O95969 90 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 TCL1BO95988 128 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 TRGC1P0CF51 173 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 S100A11P31949 105 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 FHITP49789 147 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 BCAP31P51572 246 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 AP3S2P59780 193 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 HBG1P69891 147 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 HBG2P69892 147 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 RPL24P83731 157 aaKnown RBP1.06□□□□□ -2.24
USP40-211ENST00000464956 C1orf146Q5VVC0 180 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 SLC25A34Q6PIV7 304 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 Q6ZUT4 128 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 NOTCH2NLQ7Z3S9 236 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 TMEM229BQ8NBD8 167 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 PRRT1Q99946 306 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 ZFP30Q9Y2G7 519 aa1.06□□□□□ -2.24
USP40-211ENST00000464956 TRAV9-1A0A075B6T8 112 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 C7orf66A4D0T2 115 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 IFITM10A6NMD0 228 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 A8MUU9 505 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 C17orf112F2Z3M2 114 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 CXCL5P42830 114 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 SUMO1P63165 101 aaKnown RBP1.05□□□□□ -2.24
USP40-211ENST00000464956 HBBP68871 147 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 TMEM128Q5BJH2 165 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 FAAP20Q6NZ36 180 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 TMEM136Q6ZRR5 245 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 COX8CQ7Z4L0 72 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 STX12Q86Y82 276 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 Q8IZM0 81 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 THAP6Q8TBB0 222 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 PYDC1Q8WXC3 89 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 TMEM18Q96B42 140 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 RPL39LQ96EH5 51 aaKnown RBP1.05□□□□□ -2.24
USP40-211ENST00000464956 ZNF625Q96I27 306 aaPredicted RBP1.05□□□□□ -2.24
USP40-211ENST00000464956 TPPP3Q9BW30 176 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 MTFP1Q9UDX5 166 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 SCP2D1Q9UJQ7 156 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 PYGO1Q9Y3Y4 419 aa1.05□□□□□ -2.24
USP40-211ENST00000464956 A0A1W2PPV4 95 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 PRYO14603 147 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 VPREB1P12018 145 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 FCER1GP30273 86 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 SULT1A1P50225 295 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 KRTAP10-7P60409 375 aaPredicted RBP1.04□□□□□ -2.24
USP40-211ENST00000464956 MT1XP80297 61 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 ATP6V1FQ16864 119 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 MZT2BQ6NZ67 158 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 ZFP1Q6P2D0 407 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 TEX261Q6UWH6 196 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 Q6ZN92 141 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 KRTAP19-3Q7Z4W3 81 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 LINC01561Q8N1V8 128 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 GATD1Q8NB37 220 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms