RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 GYPEP15421 78 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 SMCPP49901 116 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-216ENST00000461872 SPART-AS1P0CW21 52 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 V9GYY9 64 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 UBE2BP63146 152 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 C14orf132Q9NPU4 83 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 RNF223E7ERA6 249 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 ANGP03950 147 aaKnown RBP5.11□□□□□ -1.59
SYNE1-216ENST00000461872 Q8N2B8 174 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 TRBV7-6A0A0J9YX20 115 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 CCKP06307 115 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 RNASE13Q5GAN3 156 aaKnown RBP5.11□□□□□ -1.59
SYNE1-216ENST00000461872 WFDC9Q8NEX5 89 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 KLK5Q9Y337 293 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-216ENST00000461872 F5H768 121 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 UPK3BQ9BT76 320 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 TRAV7A0A075B6U4 112 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 COX7BP24311 80 aa5.11□□□□□ -1.59
SYNE1-216ENST00000461872 XCL1P47992 114 aa5.1□□□□□ -1.59
SYNE1-216ENST00000461872 CXCL6P80162 114 aa5.1□□□□□ -1.59
SYNE1-216ENST00000461872 ZNF702PQ9H963 129 aa5.1□□□□□ -1.59
SYNE1-216ENST00000461872 SERP1Q9Y6X1 66 aa5.1□□□□□ -1.59
SYNE1-216ENST00000461872 SEC61GP60059 68 aa5.1□□□□□ -1.59
SYNE1-216ENST00000461872 SPAG11BQ08648 103 aa5.1□□□□□ -1.59
SYNE1-216ENST00000461872 CCDC179H3BU77 68 aa5.09□□□□□ -1.59
SYNE1-216ENST00000461872 NREPQ16612 68 aa5.09□□□□□ -1.59
SYNE1-216ENST00000461872 MP68P56378 58 aa5.09□□□□□ -1.59
SYNE1-216ENST00000461872 MIFP14174 115 aa5.09□□□□□ -1.59
SYNE1-216ENST00000461872 HIGD2BQ4VC39 106 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 NRGNQ92686 78 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 ADAMTSL4-AS1Q5T5F5 129 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 CCL18P55774 89 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 C5orf38Q86SI9 138 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 DHRS4-AS1Q9P1J3 65 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 Q6ZTI0 123 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 C11orf72Q8NBR9 251 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 DNAH12Q6ZR08 3092 aa5.08□□□□□ -1.6
SYNE1-216ENST00000461872 SMIM26A0A096LP01 95 aa5.07□□□□□ -1.6
SYNE1-216ENST00000461872 LITAFQ99732 161 aa5.07□□□□□ -1.6
SYNE1-216ENST00000461872 Q8N814 137 aa5.07□□□□□ -1.6
SYNE1-216ENST00000461872 IGKV3D-7A0A0C4DH55 119 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 REG3AQ06141 175 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 CEMP1Q6PRD7 247 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-216ENST00000461872 CAMK2N2Q96S95 79 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 SMIM11BQ8TCY0 68 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 LOC110117498A0A087WWA1 95 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 ERC2-IT1O76042 136 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 Q96MF0 132 aa5.06□□□□□ -1.6
SYNE1-216ENST00000461872 SPRY2O43597 315 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 DEFB105AQ8NG35 78 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 IGHV4-28A0A0C4DH34 117 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 CHCHD10Q8WYQ3 142 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-216ENST00000461872 K7ERS5 55 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 IGHV4-31P0DP07 118 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 LELP1Q5T871 98 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 NTM-AS1Q6ZSK4 140 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 LINC00959A0A1B0GUT2 108 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 DEFB1P60022 68 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 C4orf48Q5BLP8 95 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 DEFB136Q30KP8 78 aa5.05□□□□□ -1.6
SYNE1-216ENST00000461872 M0R378 163 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 LY6G6DO95868 133 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 Q9HAA7 133 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 EGFEM1PQ0D2K5 195 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 IGHV3OR16-9A0A0B4J2B5 98 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 ODF3L2Q3SX64 289 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 SPTSSBQ8NFR3 76 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 TRAV23DV6A0A075B6W5 121 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 IGLV1-51P01701 117 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 C16orf95Q9H693 158 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 Q6ZQT7 251 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 BPY2O14599 106 aa5.04□□□□□ -1.6
SYNE1-216ENST00000461872 POLQO75417 2590 aa5.03□□□□□ -1.6
SYNE1-216ENST00000461872 DNAJC9-AS1A6NH13 148 aa5.03□□□□□ -1.6
SYNE1-216ENST00000461872 C14orf177Q52M58 125 aa5.03□□□□□ -1.6
SYNE1-216ENST00000461872 CHD7Q9P2D1 2997 aa5.03□□□□□ -1.6
SYNE1-216ENST00000461872 ETDCA0A1B0GVM5 59 aa5.03□□□□□ -1.6
SYNE1-216ENST00000461872 ZNF73O43830 326 aaPredicted RBP5.03□□□□□ -1.6
SYNE1-216ENST00000461872 C2orf48Q96LS8 159 aa5.03□□□□□ -1.6
SYNE1-216ENST00000461872 EPG5Q9HCE0 2579 aa5.02□□□□□ -1.61
SYNE1-216ENST00000461872 CLPSL2Q6UWE3 100 aa5.02□□□□□ -1.61
SYNE1-216ENST00000461872 IGKV2D-24A0A075B6R9 120 aa5.02□□□□□ -1.61
SYNE1-216ENST00000461872 C20orf197Q8N268 126 aa5.02□□□□□ -1.61
SYNE1-216ENST00000461872 FHL3Q13643 280 aa5.02□□□□□ -1.61
SYNE1-216ENST00000461872 MRPL55Q7Z7F7 128 aaKnown RBP5.02□□□□□ -1.61
SYNE1-216ENST00000461872 C6orf99Q4VX62 202 aa5.02□□□□□ -1.61
SYNE1-216ENST00000461872 ENHOQ6UWT2 76 aa5.01□□□□□ -1.61
SYNE1-216ENST00000461872 LINC00337Q8N6G1 96 aa5.01□□□□□ -1.61
SYNE1-216ENST00000461872 Q6ZSV7 163 aa5.01□□□□□ -1.61
SYNE1-216ENST00000461872 A0A096LPF7 62 aa5□□□□□ -1.61
SYNE1-216ENST00000461872 NCR3O14931 201 aa5□□□□□ -1.61
SYNE1-216ENST00000461872 CASC2Q6XLA1 102 aa5□□□□□ -1.61
SYNE1-216ENST00000461872 GVQW2A0A096LPI5 108 aaPredicted RBP5□□□□□ -1.61
SYNE1-216ENST00000461872 RPL37AP8A6NKH3 93 aa5□□□□□ -1.61
SYNE1-216ENST00000461872 LINC00269Q8N2A0 174 aa5□□□□□ -1.61
SYNE1-216ENST00000461872 H3BNG1 76 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 IGKV4-1P06312 121 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 HILS1P60008 231 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 LINC00575Q6W349 94 aa4.99□□□□□ -1.61
SYNE1-216ENST00000461872 BRK1Q8WUW1 75 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms